Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16234 | 3' | -54.1 | NC_004065.1 | + | 98105 | 0.68 | 0.952635 |
Target: 5'- aGGUGCGGgugACGaucgaaGGCA--ACUCGAACc -3' miRNA: 3'- -UCGCGCCa--UGCa-----CCGUugUGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 200961 | 0.68 | 0.950211 |
Target: 5'- gAGCGCGGcggcuccaggaucggUGCGUGGUGACgGgUCGcGACg -3' miRNA: 3'- -UCGCGCC---------------AUGCACCGUUG-UgAGC-UUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 117421 | 0.68 | 0.94855 |
Target: 5'- cGGCGCGGa--GUGGCAGC-CgaucgCGAGu -3' miRNA: 3'- -UCGCGCCaugCACCGUUGuGa----GCUUg -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 30024 | 0.68 | 0.94855 |
Target: 5'- -cCGCGGUGCccgucaagcugGUGGCGgaguucucgGCGCUCGAu- -3' miRNA: 3'- ucGCGCCAUG-----------CACCGU---------UGUGAGCUug -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 84732 | 0.68 | 0.947281 |
Target: 5'- --aGCGGcgACGUuaccccgucgucucGGCGAgGCUCGGACg -3' miRNA: 3'- ucgCGCCa-UGCA--------------CCGUUgUGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 208042 | 0.68 | 0.944238 |
Target: 5'- cGGCGUGGc-CGUGGCGGCcCUCa--- -3' miRNA: 3'- -UCGCGCCauGCACCGUUGuGAGcuug -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 67934 | 0.68 | 0.943795 |
Target: 5'- -aCGCGG-ACGUGGUAcgaGCACccguucgcuucgaUCGAGCg -3' miRNA: 3'- ucGCGCCaUGCACCGU---UGUG-------------AGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 69478 | 0.68 | 0.93923 |
Target: 5'- cGGCuGCGGUACGcGGCcAACcagaagaACUCGAcGCa -3' miRNA: 3'- -UCG-CGCCAUGCaCCG-UUG-------UGAGCU-UG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 50435 | 0.68 | 0.93923 |
Target: 5'- aGGCGCGGUcgcacacGCGUGGCGcCcCUUcAGCg -3' miRNA: 3'- -UCGCGCCA-------UGCACCGUuGuGAGcUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 176331 | 0.68 | 0.934924 |
Target: 5'- gAGgGCGGU-CGggcGGCGACACgaucaUCGGAUg -3' miRNA: 3'- -UCgCGCCAuGCa--CCGUUGUG-----AGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 113926 | 0.68 | 0.934924 |
Target: 5'- cGCGCGuGUcgACGacGCGGCGCUCGGGg -3' miRNA: 3'- uCGCGC-CA--UGCacCGUUGUGAGCUUg -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 109844 | 0.69 | 0.931949 |
Target: 5'- gAGCGCGG--CGUcgcuccccucacccaGGUGGCACUCGGAa -3' miRNA: 3'- -UCGCGCCauGCA---------------CCGUUGUGAGCUUg -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 138506 | 0.69 | 0.929919 |
Target: 5'- aGGUaGCGGUaacGCGUucgacgGGCuguuGGCGCUCGAACg -3' miRNA: 3'- -UCG-CGCCA---UGCA------CCG----UUGUGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 166439 | 0.69 | 0.919207 |
Target: 5'- uGGUGUGGUuguuACGUaGCAGCACgagcaCGGACa -3' miRNA: 3'- -UCGCGCCA----UGCAcCGUUGUGa----GCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 71136 | 0.69 | 0.913502 |
Target: 5'- cGGCGCGGUACuucgaacUGGCGcgcgacauccGCAgCUCGAAg -3' miRNA: 3'- -UCGCGCCAUGc------ACCGU----------UGU-GAGCUUg -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 187401 | 0.7 | 0.901398 |
Target: 5'- cGGCGCGGU--GUGGCGuCGagggCGAGCg -3' miRNA: 3'- -UCGCGCCAugCACCGUuGUga--GCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 50754 | 0.7 | 0.901398 |
Target: 5'- cGUGUGGUcGCGUGGaggaGACACggCGAAUc -3' miRNA: 3'- uCGCGCCA-UGCACCg---UUGUGa-GCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 45606 | 0.7 | 0.901398 |
Target: 5'- gGGCGCGGgACGagGGgAACGgUCGAGa -3' miRNA: 3'- -UCGCGCCaUGCa-CCgUUGUgAGCUUg -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 103524 | 0.7 | 0.87449 |
Target: 5'- cGCGCGGcGCaUGGCGACGCgggUGcAGCg -3' miRNA: 3'- uCGCGCCaUGcACCGUUGUGa--GC-UUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 41392 | 0.7 | 0.87449 |
Target: 5'- uGGUGUGGUACGUgcucgccgccGGCGACACggUCGccguGACg -3' miRNA: 3'- -UCGCGCCAUGCA----------CCGUUGUG--AGC----UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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