miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16234 3' -54.1 NC_004065.1 + 5697 0.72 0.78426
Target:  5'- -aCGUGGUuCGUGGCGGgACUCGGGa -3'
miRNA:   3'- ucGCGCCAuGCACCGUUgUGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 6737 0.68 0.952635
Target:  5'- -uCGgGGUAgcCGcGGCGGCACUCGggUc -3'
miRNA:   3'- ucGCgCCAU--GCaCCGUUGUGAGCuuG- -5'
16234 3' -54.1 NC_004065.1 + 22909 0.68 0.956495
Target:  5'- -aCGCGGUcaGUGGCGGCGgUCGGc- -3'
miRNA:   3'- ucGCGCCAugCACCGUUGUgAGCUug -5'
16234 3' -54.1 NC_004065.1 + 23619 0.67 0.969784
Target:  5'- gGGCagGCGGguggACG-GGCGGCuggcCUCGGGCc -3'
miRNA:   3'- -UCG--CGCCa---UGCaCCGUUGu---GAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 24211 0.66 0.98387
Target:  5'- aAGaCGCGGUugGcgaGGUuuCGCUCGcGCc -3'
miRNA:   3'- -UC-GCGCCAugCa--CCGuuGUGAGCuUG- -5'
16234 3' -54.1 NC_004065.1 + 24453 0.67 0.963561
Target:  5'- aGGCugGCGGUA-GUGGgGcaGCUCGGACa -3'
miRNA:   3'- -UCG--CGCCAUgCACCgUugUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 30024 0.68 0.94855
Target:  5'- -cCGCGGUGCccgucaagcugGUGGCGgaguucucgGCGCUCGAu- -3'
miRNA:   3'- ucGCGCCAUG-----------CACCGU---------UGUGAGCUug -5'
16234 3' -54.1 NC_004065.1 + 35749 0.71 0.852073
Target:  5'- -uCGCGGUugcaggacgGCGUGGCc-CugUCGAACg -3'
miRNA:   3'- ucGCGCCA---------UGCACCGuuGugAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 38922 0.67 0.966149
Target:  5'- uAGgGCGGUuuCGUcGGCAGgucgggugucgaGCUCGAGCg -3'
miRNA:   3'- -UCgCGCCAu-GCA-CCGUUg-----------UGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 41392 0.7 0.87449
Target:  5'- uGGUGUGGUACGUgcucgccgccGGCGACACggUCGccguGACg -3'
miRNA:   3'- -UCGCGCCAUGCA----------CCGUUGUG--AGC----UUG- -5'
16234 3' -54.1 NC_004065.1 + 41495 0.66 0.977635
Target:  5'- gGGCGuCGGgACG-GGgAGCGCgCGGGCg -3'
miRNA:   3'- -UCGC-GCCaUGCaCCgUUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 45606 0.7 0.901398
Target:  5'- gGGCGCGGgACGagGGgAACGgUCGAGa -3'
miRNA:   3'- -UCGCGCCaUGCa-CCgUUGUgAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 48638 0.67 0.960136
Target:  5'- gGGCGCGaccagcgACGUGGCGAagaugggaUCGAGCc -3'
miRNA:   3'- -UCGCGCca-----UGCACCGUUgug-----AGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 50435 0.68 0.93923
Target:  5'- aGGCGCGGUcgcacacGCGUGGCGcCcCUUcAGCg -3'
miRNA:   3'- -UCGCGCCA-------UGCACCGUuGuGAGcUUG- -5'
16234 3' -54.1 NC_004065.1 + 50754 0.7 0.901398
Target:  5'- cGUGUGGUcGCGUGGaggaGACACggCGAAUc -3'
miRNA:   3'- uCGCGCCA-UGCACCg---UUGUGa-GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 58426 0.66 0.98387
Target:  5'- aGGCgauGCGGuUGC-UGGCGGugaACUCGAGCu -3'
miRNA:   3'- -UCG---CGCC-AUGcACCGUUg--UGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 65437 0.67 0.966775
Target:  5'- gAGCgGCGGc-CGUGGUGGCuCUgGAGCg -3'
miRNA:   3'- -UCG-CGCCauGCACCGUUGuGAgCUUG- -5'
16234 3' -54.1 NC_004065.1 + 66629 0.67 0.969784
Target:  5'- gGGCuGCGGcgcUGCGUGGCGgacGCGCU--GACg -3'
miRNA:   3'- -UCG-CGCC---AUGCACCGU---UGUGAgcUUG- -5'
16234 3' -54.1 NC_004065.1 + 67934 0.68 0.943795
Target:  5'- -aCGCGG-ACGUGGUAcgaGCACccguucgcuucgaUCGAGCg -3'
miRNA:   3'- ucGCGCCaUGCACCGU---UGUG-------------AGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 68154 0.66 0.975207
Target:  5'- uGGaCGCGGUGauCGcGGCGGCGCgcgCGAc- -3'
miRNA:   3'- -UC-GCGCCAU--GCaCCGUUGUGa--GCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.