miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16234 3' -54.1 NC_004065.1 + 68944 0.66 0.981959
Target:  5'- cGCGCGGagUACGagacGGCGcgcaaGCAgauCUCGGACg -3'
miRNA:   3'- uCGCGCC--AUGCa---CCGU-----UGU---GAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 69292 0.66 0.98387
Target:  5'- aGGCGCGcGUACGUgcaGGCggUGa-CGGGCa -3'
miRNA:   3'- -UCGCGC-CAUGCA---CCGuuGUgaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 69478 0.68 0.93923
Target:  5'- cGGCuGCGGUACGcGGCcAACcagaagaACUCGAcGCa -3'
miRNA:   3'- -UCG-CGCCAUGCaCCG-UUG-------UGAGCU-UG- -5'
16234 3' -54.1 NC_004065.1 + 71136 0.69 0.913502
Target:  5'- cGGCGCGGUACuucgaacUGGCGcgcgacauccGCAgCUCGAAg -3'
miRNA:   3'- -UCGCGCCAUGc------ACCGU----------UGU-GAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 78280 0.67 0.960136
Target:  5'- cGUGCGGUGguCGUaGCGGCuCUCGAGg -3'
miRNA:   3'- uCGCGCCAU--GCAcCGUUGuGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 79342 0.71 0.827907
Target:  5'- cGCGCGGaggACGagGGCGgcgcgGCGCUgGAACa -3'
miRNA:   3'- uCGCGCCa--UGCa-CCGU-----UGUGAgCUUG- -5'
16234 3' -54.1 NC_004065.1 + 84732 0.68 0.947281
Target:  5'- --aGCGGcgACGUuaccccgucgucucGGCGAgGCUCGGACg -3'
miRNA:   3'- ucgCGCCa-UGCA--------------CCGUUgUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 87049 0.66 0.977635
Target:  5'- aAGaCGCGGU-CGUaGGacaccaGACACUCGcGCg -3'
miRNA:   3'- -UC-GCGCCAuGCA-CCg-----UUGUGAGCuUG- -5'
16234 3' -54.1 NC_004065.1 + 88837 0.65 0.985113
Target:  5'- cGGCGCGGUcauaguugaugagcACGUucauaGGCGuCACgUCGAAg -3'
miRNA:   3'- -UCGCGCCA--------------UGCA-----CCGUuGUG-AGCUUg -5'
16234 3' -54.1 NC_004065.1 + 92532 0.66 0.975207
Target:  5'- cGCGCGcGUACGggcgGGCgGGCGCgCGcACg -3'
miRNA:   3'- uCGCGC-CAUGCa---CCG-UUGUGaGCuUG- -5'
16234 3' -54.1 NC_004065.1 + 96581 0.66 0.98387
Target:  5'- gAGcCGCGacGCGUGGCGACGCUg---- -3'
miRNA:   3'- -UC-GCGCcaUGCACCGUUGUGAgcuug -5'
16234 3' -54.1 NC_004065.1 + 97585 0.66 0.977635
Target:  5'- aGGgGCGG-ACG-GcGCAACACgUCGAAg -3'
miRNA:   3'- -UCgCGCCaUGCaC-CGUUGUG-AGCUUg -5'
16234 3' -54.1 NC_004065.1 + 98105 0.68 0.952635
Target:  5'- aGGUGCGGgugACGaucgaaGGCA--ACUCGAACc -3'
miRNA:   3'- -UCGCGCCa--UGCa-----CCGUugUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 103524 0.7 0.87449
Target:  5'- cGCGCGGcGCaUGGCGACGCgggUGcAGCg -3'
miRNA:   3'- uCGCGCCaUGcACCGUUGUGa--GC-UUG- -5'
16234 3' -54.1 NC_004065.1 + 105438 0.78 0.461489
Target:  5'- uGGUGCGGgACGUGGCGACGgaCGAGa -3'
miRNA:   3'- -UCGCGCCaUGCACCGUUGUgaGCUUg -5'
16234 3' -54.1 NC_004065.1 + 106996 0.66 0.98387
Target:  5'- cGCGUGcaucccugacgaGUACGUGGCcgccAAUACcCGGACg -3'
miRNA:   3'- uCGCGC------------CAUGCACCG----UUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 109709 0.67 0.969784
Target:  5'- cGCGCGGcgacccuCGgggGGCAACGCUUucGCc -3'
miRNA:   3'- uCGCGCCau-----GCa--CCGUUGUGAGcuUG- -5'
16234 3' -54.1 NC_004065.1 + 109844 0.69 0.931949
Target:  5'- gAGCGCGG--CGUcgcuccccucacccaGGUGGCACUCGGAa -3'
miRNA:   3'- -UCGCGCCauGCA---------------CCGUUGUGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 110840 0.66 0.979884
Target:  5'- cAGUGCGGgGCGcgGGCcgccCGCgUCGAACc -3'
miRNA:   3'- -UCGCGCCaUGCa-CCGuu--GUG-AGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 112990 0.72 0.79329
Target:  5'- aGGCGCGGUgcaGCGUcucGGuCGGCACgUGAGCg -3'
miRNA:   3'- -UCGCGCCA---UGCA---CC-GUUGUGaGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.