miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16234 3' -54.1 NC_004065.1 + 113926 0.68 0.934924
Target:  5'- cGCGCGuGUcgACGacGCGGCGCUCGGGg -3'
miRNA:   3'- uCGCGC-CA--UGCacCGUUGUGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 116763 0.66 0.979884
Target:  5'- cGCGCGG-GCGguuucuGCAcCugUCGGACg -3'
miRNA:   3'- uCGCGCCaUGCac----CGUuGugAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 117421 0.68 0.94855
Target:  5'- cGGCGCGGa--GUGGCAGC-CgaucgCGAGu -3'
miRNA:   3'- -UCGCGCCaugCACCGUUGuGa----GCUUg -5'
16234 3' -54.1 NC_004065.1 + 119025 0.71 0.844204
Target:  5'- cGCGUGGUACaUGGCcgUGCUCGucAACa -3'
miRNA:   3'- uCGCGCCAUGcACCGuuGUGAGC--UUG- -5'
16234 3' -54.1 NC_004065.1 + 119526 0.72 0.819494
Target:  5'- cGGCGCGGggACGUGGUcgAGgGCcagggCGAACa -3'
miRNA:   3'- -UCGCGCCa-UGCACCG--UUgUGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 124218 0.78 0.49888
Target:  5'- cGUGCGGUGCcaGUGGUggUACUCGuGCg -3'
miRNA:   3'- uCGCGCCAUG--CACCGuuGUGAGCuUG- -5'
16234 3' -54.1 NC_004065.1 + 127240 0.68 0.952635
Target:  5'- gGGCGCGGUgGCG-GGgAugAUgagcgCGAGCg -3'
miRNA:   3'- -UCGCGCCA-UGCaCCgUugUGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 131643 0.66 0.975207
Target:  5'- uGCGCuGG-AUGUGGCGGaGCuggUCGAGCa -3'
miRNA:   3'- uCGCG-CCaUGCACCGUUgUG---AGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 136619 0.66 0.979884
Target:  5'- gGGCGCuGGUcCGaGGCGGCGgUCcgGAGCg -3'
miRNA:   3'- -UCGCG-CCAuGCaCCGUUGUgAG--CUUG- -5'
16234 3' -54.1 NC_004065.1 + 136778 0.7 0.867222
Target:  5'- gAGCGUGGgggaUGCGggggGGCca-GCUCGAGCu -3'
miRNA:   3'- -UCGCGCC----AUGCa---CCGuugUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 138506 0.69 0.929919
Target:  5'- aGGUaGCGGUaacGCGUucgacgGGCuguuGGCGCUCGAACg -3'
miRNA:   3'- -UCG-CGCCA---UGCA------CCG----UUGUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 141365 0.76 0.607389
Target:  5'- cGCG-GGUGC-UGGCGGCGCUCGAc- -3'
miRNA:   3'- uCGCgCCAUGcACCGUUGUGAGCUug -5'
16234 3' -54.1 NC_004065.1 + 151087 0.7 0.867222
Target:  5'- uGCGCGG-GCcUGGUGGCGCcCGAGCu -3'
miRNA:   3'- uCGCGCCaUGcACCGUUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 155835 0.72 0.78426
Target:  5'- cGCGaCGGUGCGcuggagGGCggUcaucgGCUCGAACg -3'
miRNA:   3'- uCGC-GCCAUGCa-----CCGuuG-----UGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 164764 0.73 0.756404
Target:  5'- cGUGCGGUACGUGGCGugcagggagauCAUgCGGAUg -3'
miRNA:   3'- uCGCGCCAUGCACCGUu----------GUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 166439 0.69 0.919207
Target:  5'- uGGUGUGGUuguuACGUaGCAGCACgagcaCGGACa -3'
miRNA:   3'- -UCGCGCCA----UGCAcCGUUGUGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 168545 0.67 0.972592
Target:  5'- uAGCgGCGGUG-GUGGCAGCggcggcggcgGCgacagCGGGCg -3'
miRNA:   3'- -UCG-CGCCAUgCACCGUUG----------UGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 169384 0.66 0.98387
Target:  5'- uGCGUGGcGCGgGGCAACACggccgUGGu- -3'
miRNA:   3'- uCGCGCCaUGCaCCGUUGUGa----GCUug -5'
16234 3' -54.1 NC_004065.1 + 173440 0.66 0.975207
Target:  5'- gGGUGaCGuucgacGUACcgGUGGCGGCGCUCGAc- -3'
miRNA:   3'- -UCGC-GC------CAUG--CACCGUUGUGAGCUug -5'
16234 3' -54.1 NC_004065.1 + 176331 0.68 0.934924
Target:  5'- gAGgGCGGU-CGggcGGCGACACgaucaUCGGAUg -3'
miRNA:   3'- -UCgCGCCAuGCa--CCGUUGUG-----AGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.