Results 61 - 75 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16234 | 3' | -54.1 | NC_004065.1 | + | 179589 | 0.68 | 0.952635 |
Target: 5'- gGGCGCcacGCGUGuGCGACcgcgcCUCGAGCg -3' miRNA: 3'- -UCGCGccaUGCAC-CGUUGu----GAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 187401 | 0.7 | 0.901398 |
Target: 5'- cGGCGCGGU--GUGGCGuCGagggCGAGCg -3' miRNA: 3'- -UCGCGCCAugCACCGUuGUga--GCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 197630 | 0.73 | 0.756404 |
Target: 5'- cGCGaaGUACGUcGGCGGCAC-CGGGCu -3' miRNA: 3'- uCGCgcCAUGCA-CCGUUGUGaGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 198310 | 0.66 | 0.98387 |
Target: 5'- uGUGCGGggagcucacCGUcaucGGC-ACGCUCGGGCa -3' miRNA: 3'- uCGCGCCau-------GCA----CCGuUGUGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 199006 | 0.66 | 0.981959 |
Target: 5'- gGGcCGCGGc-CGagGGCAA-GCUCGAACa -3' miRNA: 3'- -UC-GCGCCauGCa-CCGUUgUGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 200785 | 0.67 | 0.960136 |
Target: 5'- cGCGCGGcggugGCG-GGCGACGgcguCUCGGcGCg -3' miRNA: 3'- uCGCGCCa----UGCaCCGUUGU----GAGCU-UG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 200961 | 0.68 | 0.950211 |
Target: 5'- gAGCGCGGcggcuccaggaucggUGCGUGGUGACgGgUCGcGACg -3' miRNA: 3'- -UCGCGCC---------------AUGCACCGUUG-UgAGC-UUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 208042 | 0.68 | 0.944238 |
Target: 5'- cGGCGUGGc-CGUGGCGGCcCUCa--- -3' miRNA: 3'- -UCGCGCCauGCACCGUUGuGAGcuug -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 209947 | 0.66 | 0.981959 |
Target: 5'- cAGUuaGuGUAUGUGGCccGACgggcgGCUCGAGCg -3' miRNA: 3'- -UCGcgC-CAUGCACCG--UUG-----UGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 210597 | 0.66 | 0.981959 |
Target: 5'- cAGCGCGGUGCcuccGGCAccuccgccgACGCcggCGggUa -3' miRNA: 3'- -UCGCGCCAUGca--CCGU---------UGUGa--GCuuG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 213135 | 0.66 | 0.984589 |
Target: 5'- uGCGUGGUcaccguaGUGGCGuuggggcuggagcucAUACUCGAAg -3' miRNA: 3'- uCGCGCCAug-----CACCGU---------------UGUGAGCUUg -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 220742 | 0.66 | 0.974443 |
Target: 5'- -uCGCGGUcgGCGUGuGCGacgucugcaucucuGCACUCGcGACg -3' miRNA: 3'- ucGCGCCA--UGCAC-CGU--------------UGUGAGC-UUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 222398 | 0.66 | 0.979884 |
Target: 5'- uGCGCGccACGUGGacggguCGACAUUCGAu- -3' miRNA: 3'- uCGCGCcaUGCACC------GUUGUGAGCUug -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 229222 | 1.11 | 0.00516 |
Target: 5'- gAGCGCGGUACGUGGCAACACUCGAACa -3' miRNA: 3'- -UCGCGCCAUGCACCGUUGUGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 229631 | 0.67 | 0.972592 |
Target: 5'- cGCGCc--GCGUGGUAGCAUuaGAACc -3' miRNA: 3'- uCGCGccaUGCACCGUUGUGagCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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