miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16234 3' -54.1 NC_004065.1 + 229631 0.67 0.972592
Target:  5'- cGCGCc--GCGUGGUAGCAUuaGAACc -3'
miRNA:   3'- uCGCGccaUGCACCGUUGUGagCUUG- -5'
16234 3' -54.1 NC_004065.1 + 229222 1.11 0.00516
Target:  5'- gAGCGCGGUACGUGGCAACACUCGAACa -3'
miRNA:   3'- -UCGCGCCAUGCACCGUUGUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 222398 0.66 0.979884
Target:  5'- uGCGCGccACGUGGacggguCGACAUUCGAu- -3'
miRNA:   3'- uCGCGCcaUGCACC------GUUGUGAGCUug -5'
16234 3' -54.1 NC_004065.1 + 220742 0.66 0.974443
Target:  5'- -uCGCGGUcgGCGUGuGCGacgucugcaucucuGCACUCGcGACg -3'
miRNA:   3'- ucGCGCCA--UGCAC-CGU--------------UGUGAGC-UUG- -5'
16234 3' -54.1 NC_004065.1 + 213135 0.66 0.984589
Target:  5'- uGCGUGGUcaccguaGUGGCGuuggggcuggagcucAUACUCGAAg -3'
miRNA:   3'- uCGCGCCAug-----CACCGU---------------UGUGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 210597 0.66 0.981959
Target:  5'- cAGCGCGGUGCcuccGGCAccuccgccgACGCcggCGggUa -3'
miRNA:   3'- -UCGCGCCAUGca--CCGU---------UGUGa--GCuuG- -5'
16234 3' -54.1 NC_004065.1 + 209947 0.66 0.981959
Target:  5'- cAGUuaGuGUAUGUGGCccGACgggcgGCUCGAGCg -3'
miRNA:   3'- -UCGcgC-CAUGCACCG--UUG-----UGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 208042 0.68 0.944238
Target:  5'- cGGCGUGGc-CGUGGCGGCcCUCa--- -3'
miRNA:   3'- -UCGCGCCauGCACCGUUGuGAGcuug -5'
16234 3' -54.1 NC_004065.1 + 200961 0.68 0.950211
Target:  5'- gAGCGCGGcggcuccaggaucggUGCGUGGUGACgGgUCGcGACg -3'
miRNA:   3'- -UCGCGCC---------------AUGCACCGUUG-UgAGC-UUG- -5'
16234 3' -54.1 NC_004065.1 + 200785 0.67 0.960136
Target:  5'- cGCGCGGcggugGCG-GGCGACGgcguCUCGGcGCg -3'
miRNA:   3'- uCGCGCCa----UGCaCCGUUGU----GAGCU-UG- -5'
16234 3' -54.1 NC_004065.1 + 199006 0.66 0.981959
Target:  5'- gGGcCGCGGc-CGagGGCAA-GCUCGAACa -3'
miRNA:   3'- -UC-GCGCCauGCa-CCGUUgUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 198310 0.66 0.98387
Target:  5'- uGUGCGGggagcucacCGUcaucGGC-ACGCUCGGGCa -3'
miRNA:   3'- uCGCGCCau-------GCA----CCGuUGUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 197630 0.73 0.756404
Target:  5'- cGCGaaGUACGUcGGCGGCAC-CGGGCu -3'
miRNA:   3'- uCGCgcCAUGCA-CCGUUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 187401 0.7 0.901398
Target:  5'- cGGCGCGGU--GUGGCGuCGagggCGAGCg -3'
miRNA:   3'- -UCGCGCCAugCACCGUuGUga--GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 179589 0.68 0.952635
Target:  5'- gGGCGCcacGCGUGuGCGACcgcgcCUCGAGCg -3'
miRNA:   3'- -UCGCGccaUGCAC-CGUUGu----GAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 176331 0.68 0.934924
Target:  5'- gAGgGCGGU-CGggcGGCGACACgaucaUCGGAUg -3'
miRNA:   3'- -UCgCGCCAuGCa--CCGUUGUG-----AGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 173440 0.66 0.975207
Target:  5'- gGGUGaCGuucgacGUACcgGUGGCGGCGCUCGAc- -3'
miRNA:   3'- -UCGC-GC------CAUG--CACCGUUGUGAGCUug -5'
16234 3' -54.1 NC_004065.1 + 169384 0.66 0.98387
Target:  5'- uGCGUGGcGCGgGGCAACACggccgUGGu- -3'
miRNA:   3'- uCGCGCCaUGCaCCGUUGUGa----GCUug -5'
16234 3' -54.1 NC_004065.1 + 168545 0.67 0.972592
Target:  5'- uAGCgGCGGUG-GUGGCAGCggcggcggcgGCgacagCGGGCg -3'
miRNA:   3'- -UCG-CGCCAUgCACCGUUG----------UGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 166439 0.69 0.919207
Target:  5'- uGGUGUGGUuguuACGUaGCAGCACgagcaCGGACa -3'
miRNA:   3'- -UCGCGCCA----UGCAcCGUUGUGa----GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.