miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16234 3' -54.1 NC_004065.1 + 200785 0.67 0.960136
Target:  5'- cGCGCGGcggugGCG-GGCGACGgcguCUCGGcGCg -3'
miRNA:   3'- uCGCGCCa----UGCaCCGUUGU----GAGCU-UG- -5'
16234 3' -54.1 NC_004065.1 + 113926 0.68 0.934924
Target:  5'- cGCGCGuGUcgACGacGCGGCGCUCGGGg -3'
miRNA:   3'- uCGCGC-CA--UGCacCGUUGUGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 50435 0.68 0.93923
Target:  5'- aGGCGCGGUcgcacacGCGUGGCGcCcCUUcAGCg -3'
miRNA:   3'- -UCGCGCCA-------UGCACCGUuGuGAGcUUG- -5'
16234 3' -54.1 NC_004065.1 + 69478 0.68 0.93923
Target:  5'- cGGCuGCGGUACGcGGCcAACcagaagaACUCGAcGCa -3'
miRNA:   3'- -UCG-CGCCAUGCaCCG-UUG-------UGAGCU-UG- -5'
16234 3' -54.1 NC_004065.1 + 117421 0.68 0.94855
Target:  5'- cGGCGCGGa--GUGGCAGC-CgaucgCGAGu -3'
miRNA:   3'- -UCGCGCCaugCACCGUUGuGa----GCUUg -5'
16234 3' -54.1 NC_004065.1 + 200961 0.68 0.950211
Target:  5'- gAGCGCGGcggcuccaggaucggUGCGUGGUGACgGgUCGcGACg -3'
miRNA:   3'- -UCGCGCC---------------AUGCACCGUUG-UgAGC-UUG- -5'
16234 3' -54.1 NC_004065.1 + 127240 0.68 0.952635
Target:  5'- gGGCGCGGUgGCG-GGgAugAUgagcgCGAGCg -3'
miRNA:   3'- -UCGCGCCA-UGCaCCgUugUGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 22909 0.68 0.956495
Target:  5'- -aCGCGGUcaGUGGCGGCGgUCGGc- -3'
miRNA:   3'- ucGCGCCAugCACCGUUGUgAGCUug -5'
16234 3' -54.1 NC_004065.1 + 48638 0.67 0.960136
Target:  5'- gGGCGCGaccagcgACGUGGCGAagaugggaUCGAGCc -3'
miRNA:   3'- -UCGCGCca-----UGCACCGUUgug-----AGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 138506 0.69 0.929919
Target:  5'- aGGUaGCGGUaacGCGUucgacgGGCuguuGGCGCUCGAACg -3'
miRNA:   3'- -UCG-CGCCA---UGCA------CCG----UUGUGAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 166439 0.69 0.919207
Target:  5'- uGGUGUGGUuguuACGUaGCAGCACgagcaCGGACa -3'
miRNA:   3'- -UCGCGCCA----UGCAcCGUUGUGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 71136 0.69 0.913502
Target:  5'- cGGCGCGGUACuucgaacUGGCGcgcgacauccGCAgCUCGAAg -3'
miRNA:   3'- -UCGCGCCAUGc------ACCGU----------UGU-GAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 124218 0.78 0.49888
Target:  5'- cGUGCGGUGCcaGUGGUggUACUCGuGCg -3'
miRNA:   3'- uCGCGCCAUG--CACCGuuGUGAGCuUG- -5'
16234 3' -54.1 NC_004065.1 + 197630 0.73 0.756404
Target:  5'- cGCGaaGUACGUcGGCGGCAC-CGGGCu -3'
miRNA:   3'- uCGCgcCAUGCA-CCGUUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 112990 0.72 0.79329
Target:  5'- aGGCGCGGUgcaGCGUcucGGuCGGCACgUGAGCg -3'
miRNA:   3'- -UCGCGCCA---UGCA---CC-GUUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 119526 0.72 0.819494
Target:  5'- cGGCGCGGggACGUGGUcgAGgGCcagggCGAACa -3'
miRNA:   3'- -UCGCGCCa-UGCACCG--UUgUGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 119025 0.71 0.844204
Target:  5'- cGCGUGGUACaUGGCcgUGCUCGucAACa -3'
miRNA:   3'- uCGCGCCAUGcACCGuuGUGAGC--UUG- -5'
16234 3' -54.1 NC_004065.1 + 151087 0.7 0.867222
Target:  5'- uGCGCGG-GCcUGGUGGCGCcCGAGCu -3'
miRNA:   3'- uCGCGCCaUGcACCGUUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 50754 0.7 0.901398
Target:  5'- cGUGUGGUcGCGUGGaggaGACACggCGAAUc -3'
miRNA:   3'- uCGCGCCA-UGCACCg---UUGUGa-GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 45606 0.7 0.901398
Target:  5'- gGGCGCGGgACGagGGgAACGgUCGAGa -3'
miRNA:   3'- -UCGCGCCaUGCa-CCgUUGUgAGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.