Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16234 | 3' | -54.1 | NC_004065.1 | + | 105438 | 0.78 | 0.461489 |
Target: 5'- uGGUGCGGgACGUGGCGACGgaCGAGa -3' miRNA: 3'- -UCGCGCCaUGCACCGUUGUgaGCUUg -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 179589 | 0.68 | 0.952635 |
Target: 5'- gGGCGCcacGCGUGuGCGACcgcgcCUCGAGCg -3' miRNA: 3'- -UCGCGccaUGCAC-CGUUGu----GAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 98105 | 0.68 | 0.952635 |
Target: 5'- aGGUGCGGgugACGaucgaaGGCA--ACUCGAACc -3' miRNA: 3'- -UCGCGCCa--UGCa-----CCGUugUGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 88837 | 0.65 | 0.985113 |
Target: 5'- cGGCGCGGUcauaguugaugagcACGUucauaGGCGuCACgUCGAAg -3' miRNA: 3'- -UCGCGCCA--------------UGCA-----CCGUuGUG-AGCUUg -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 5697 | 0.72 | 0.78426 |
Target: 5'- -aCGUGGUuCGUGGCGGgACUCGGGa -3' miRNA: 3'- ucGCGCCAuGCACCGUUgUGAGCUUg -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 79342 | 0.71 | 0.827907 |
Target: 5'- cGCGCGGaggACGagGGCGgcgcgGCGCUgGAACa -3' miRNA: 3'- uCGCGCCa--UGCa-CCGU-----UGUGAgCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 136778 | 0.7 | 0.867222 |
Target: 5'- gAGCGUGGgggaUGCGggggGGCca-GCUCGAGCu -3' miRNA: 3'- -UCGCGCC----AUGCa---CCGuugUGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 41392 | 0.7 | 0.87449 |
Target: 5'- uGGUGUGGUACGUgcucgccgccGGCGACACggUCGccguGACg -3' miRNA: 3'- -UCGCGCCAUGCA----------CCGUUGUG--AGC----UUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 109844 | 0.69 | 0.931949 |
Target: 5'- gAGCGCGG--CGUcgcuccccucacccaGGUGGCACUCGGAa -3' miRNA: 3'- -UCGCGCCauGCA---------------CCGUUGUGAGCUUg -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 30024 | 0.68 | 0.94855 |
Target: 5'- -cCGCGGUGCccgucaagcugGUGGCGgaguucucgGCGCUCGAu- -3' miRNA: 3'- ucGCGCCAUG-----------CACCGU---------UGUGAGCUug -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 67934 | 0.68 | 0.943795 |
Target: 5'- -aCGCGG-ACGUGGUAcgaGCACccguucgcuucgaUCGAGCg -3' miRNA: 3'- ucGCGCCaUGCACCGU---UGUG-------------AGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 187401 | 0.7 | 0.901398 |
Target: 5'- cGGCGCGGU--GUGGCGuCGagggCGAGCg -3' miRNA: 3'- -UCGCGCCAugCACCGUuGUga--GCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 141365 | 0.76 | 0.607389 |
Target: 5'- cGCG-GGUGC-UGGCGGCGCUCGAc- -3' miRNA: 3'- uCGCgCCAUGcACCGUUGUGAGCUug -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 208042 | 0.68 | 0.944238 |
Target: 5'- cGGCGUGGc-CGUGGCGGCcCUCa--- -3' miRNA: 3'- -UCGCGCCauGCACCGUUGuGAGcuug -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 164764 | 0.73 | 0.756404 |
Target: 5'- cGUGCGGUACGUGGCGugcagggagauCAUgCGGAUg -3' miRNA: 3'- uCGCGCCAUGCACCGUu----------GUGaGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 103524 | 0.7 | 0.87449 |
Target: 5'- cGCGCGGcGCaUGGCGACGCgggUGcAGCg -3' miRNA: 3'- uCGCGCCaUGcACCGUUGUGa--GC-UUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 84732 | 0.68 | 0.947281 |
Target: 5'- --aGCGGcgACGUuaccccgucgucucGGCGAgGCUCGGACg -3' miRNA: 3'- ucgCGCCa-UGCA--------------CCGUUgUGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 6737 | 0.68 | 0.952635 |
Target: 5'- -uCGgGGUAgcCGcGGCGGCACUCGggUc -3' miRNA: 3'- ucGCgCCAU--GCaCCGUUGUGAGCuuG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 155835 | 0.72 | 0.78426 |
Target: 5'- cGCGaCGGUGCGcuggagGGCggUcaucgGCUCGAACg -3' miRNA: 3'- uCGC-GCCAUGCa-----CCGuuG-----UGAGCUUG- -5' |
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16234 | 3' | -54.1 | NC_004065.1 | + | 35749 | 0.71 | 0.852073 |
Target: 5'- -uCGCGGUugcaggacgGCGUGGCc-CugUCGAACg -3' miRNA: 3'- ucGCGCCA---------UGCACCGuuGugAGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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