miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16234 3' -54.1 NC_004065.1 + 151087 0.7 0.867222
Target:  5'- uGCGCGG-GCcUGGUGGCGCcCGAGCu -3'
miRNA:   3'- uCGCGCCaUGcACCGUUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 119025 0.71 0.844204
Target:  5'- cGCGUGGUACaUGGCcgUGCUCGucAACa -3'
miRNA:   3'- uCGCGCCAUGcACCGuuGUGAGC--UUG- -5'
16234 3' -54.1 NC_004065.1 + 119526 0.72 0.819494
Target:  5'- cGGCGCGGggACGUGGUcgAGgGCcagggCGAACa -3'
miRNA:   3'- -UCGCGCCa-UGCACCG--UUgUGa----GCUUG- -5'
16234 3' -54.1 NC_004065.1 + 92532 0.66 0.975207
Target:  5'- cGCGCGcGUACGggcgGGCgGGCGCgCGcACg -3'
miRNA:   3'- uCGCGC-CAUGCa---CCG-UUGUGaGCuUG- -5'
16234 3' -54.1 NC_004065.1 + 197630 0.73 0.756404
Target:  5'- cGCGaaGUACGUcGGCGGCAC-CGGGCu -3'
miRNA:   3'- uCGCgcCAUGCA-CCGUUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 68154 0.66 0.975207
Target:  5'- uGGaCGCGGUGauCGcGGCGGCGCgcgCGAc- -3'
miRNA:   3'- -UC-GCGCCAU--GCaCCGUUGUGa--GCUug -5'
16234 3' -54.1 NC_004065.1 + 113926 0.68 0.934924
Target:  5'- cGCGCGuGUcgACGacGCGGCGCUCGGGg -3'
miRNA:   3'- uCGCGC-CA--UGCacCGUUGUGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 50435 0.68 0.93923
Target:  5'- aGGCGCGGUcgcacacGCGUGGCGcCcCUUcAGCg -3'
miRNA:   3'- -UCGCGCCA-------UGCACCGUuGuGAGcUUG- -5'
16234 3' -54.1 NC_004065.1 + 200785 0.67 0.960136
Target:  5'- cGCGCGGcggugGCG-GGCGACGgcguCUCGGcGCg -3'
miRNA:   3'- uCGCGCCa----UGCaCCGUUGU----GAGCU-UG- -5'
16234 3' -54.1 NC_004065.1 + 48638 0.67 0.960136
Target:  5'- gGGCGCGaccagcgACGUGGCGAagaugggaUCGAGCc -3'
miRNA:   3'- -UCGCGCca-----UGCACCGUUgug-----AGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 22909 0.68 0.956495
Target:  5'- -aCGCGGUcaGUGGCGGCGgUCGGc- -3'
miRNA:   3'- ucGCGCCAugCACCGUUGUgAGCUug -5'
16234 3' -54.1 NC_004065.1 + 96581 0.66 0.98387
Target:  5'- gAGcCGCGacGCGUGGCGACGCUg---- -3'
miRNA:   3'- -UC-GCGCcaUGCACCGUUGUGAgcuug -5'
16234 3' -54.1 NC_004065.1 + 24211 0.66 0.98387
Target:  5'- aAGaCGCGGUugGcgaGGUuuCGCUCGcGCc -3'
miRNA:   3'- -UC-GCGCCAugCa--CCGuuGUGAGCuUG- -5'
16234 3' -54.1 NC_004065.1 + 106996 0.66 0.98387
Target:  5'- cGCGUGcaucccugacgaGUACGUGGCcgccAAUACcCGGACg -3'
miRNA:   3'- uCGCGC------------CAUGCACCG----UUGUGaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 69292 0.66 0.98387
Target:  5'- aGGCGCGcGUACGUgcaGGCggUGa-CGGGCa -3'
miRNA:   3'- -UCGCGC-CAUGCA---CCGuuGUgaGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 213135 0.66 0.984589
Target:  5'- uGCGUGGUcaccguaGUGGCGuuggggcuggagcucAUACUCGAAg -3'
miRNA:   3'- uCGCGCCAug-----CACCGU---------------UGUGAGCUUg -5'
16234 3' -54.1 NC_004065.1 + 23619 0.67 0.969784
Target:  5'- gGGCagGCGGguggACG-GGCGGCuggcCUCGGGCc -3'
miRNA:   3'- -UCG--CGCCa---UGCaCCGUUGu---GAGCUUG- -5'
16234 3' -54.1 NC_004065.1 + 66629 0.67 0.969784
Target:  5'- gGGCuGCGGcgcUGCGUGGCGgacGCGCU--GACg -3'
miRNA:   3'- -UCG-CGCC---AUGCACCGU---UGUGAgcUUG- -5'
16234 3' -54.1 NC_004065.1 + 109709 0.67 0.969784
Target:  5'- cGCGCGGcgacccuCGgggGGCAACGCUUucGCc -3'
miRNA:   3'- uCGCGCCau-----GCa--CCGUUGUGAGcuUG- -5'
16234 3' -54.1 NC_004065.1 + 69478 0.68 0.93923
Target:  5'- cGGCuGCGGUACGcGGCcAACcagaagaACUCGAcGCa -3'
miRNA:   3'- -UCG-CGCCAUGCaCCG-UUG-------UGAGCU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.