miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16234 5' -57.4 NC_004065.1 + 4876 0.66 0.94395
Target:  5'- -gGCUCGGucacccAGGagGAGCGUccgcgucccGAGCCCa -3'
miRNA:   3'- ugCGAGCU------UCCagCUCGCG---------CUUGGGc -5'
16234 5' -57.4 NC_004065.1 + 17508 0.66 0.94395
Target:  5'- gGCGUgcggcucagCGGAGGUCGuGCG---GCCCGa -3'
miRNA:   3'- -UGCGa--------GCUUCCAGCuCGCgcuUGGGC- -5'
16234 5' -57.4 NC_004065.1 + 206512 0.66 0.94395
Target:  5'- gACGCUCGucGaUCGAgGCGCuacCCCGg -3'
miRNA:   3'- -UGCGAGCuuCcAGCU-CGCGcuuGGGC- -5'
16234 5' -57.4 NC_004065.1 + 88164 0.66 0.94395
Target:  5'- cCGCUCGccGGaCGAGCgGCGGACg-- -3'
miRNA:   3'- uGCGAGCuuCCaGCUCG-CGCUUGggc -5'
16234 5' -57.4 NC_004065.1 + 197341 0.66 0.94352
Target:  5'- cGCGUccCGAAGG-CGcuGCGCGAgaaccgcGCCCGc -3'
miRNA:   3'- -UGCGa-GCUUCCaGCu-CGCGCU-------UGGGC- -5'
16234 5' -57.4 NC_004065.1 + 50428 0.66 0.93955
Target:  5'- uCGCUCGAGgcgcGGUCGcacacGCGUGGcGCCCc -3'
miRNA:   3'- uGCGAGCUU----CCAGCu----CGCGCU-UGGGc -5'
16234 5' -57.4 NC_004065.1 + 109607 0.66 0.93955
Target:  5'- cGCGCUCGAccccCGGGcCGCGGuGCCCa -3'
miRNA:   3'- -UGCGAGCUuccaGCUC-GCGCU-UGGGc -5'
16234 5' -57.4 NC_004065.1 + 203190 0.66 0.93955
Target:  5'- uUGgUCGAAGGUCGAcucuuGCGUGGcaguuuggguggGCUCGg -3'
miRNA:   3'- uGCgAGCUUCCAGCU-----CGCGCU------------UGGGC- -5'
16234 5' -57.4 NC_004065.1 + 59914 0.66 0.934933
Target:  5'- cUGCUCGAGaaagacguuGUCGcGGCGCGGccagaaGCCCGg -3'
miRNA:   3'- uGCGAGCUUc--------CAGC-UCGCGCU------UGGGC- -5'
16234 5' -57.4 NC_004065.1 + 195806 0.66 0.934933
Target:  5'- uGCGCUgaAGGGUCGGGUGgGAcggugagacggcGCUCGa -3'
miRNA:   3'- -UGCGAgcUUCCAGCUCGCgCU------------UGGGC- -5'
16234 5' -57.4 NC_004065.1 + 198995 0.66 0.934933
Target:  5'- gGCGCUCGGcAGGgccgcggcCGAGgGCaAGCUCGa -3'
miRNA:   3'- -UGCGAGCU-UCCa-------GCUCgCGcUUGGGC- -5'
16234 5' -57.4 NC_004065.1 + 229551 0.66 0.934933
Target:  5'- cGCGCggccCGGAGGcugacucaggCGAGCGCGcgUCUGg -3'
miRNA:   3'- -UGCGa---GCUUCCa---------GCUCGCGCuuGGGC- -5'
16234 5' -57.4 NC_004065.1 + 1961 0.66 0.934933
Target:  5'- uACGCUCGAGacGGUUGAaGgGUGGuaagcGCCUGa -3'
miRNA:   3'- -UGCGAGCUU--CCAGCU-CgCGCU-----UGGGC- -5'
16234 5' -57.4 NC_004065.1 + 46271 0.66 0.930099
Target:  5'- cCGUUCGAccuGGUCGAGgcCGUGGgcgACCUGg -3'
miRNA:   3'- uGCGAGCUu--CCAGCUC--GCGCU---UGGGC- -5'
16234 5' -57.4 NC_004065.1 + 132109 0.66 0.925047
Target:  5'- gACGCgCGgcGGuUCGAG-GUGAACgCCGg -3'
miRNA:   3'- -UGCGaGCuuCC-AGCUCgCGCUUG-GGC- -5'
16234 5' -57.4 NC_004065.1 + 154331 0.66 0.919776
Target:  5'- uACGCa-GGAGGUgGgGGCGCGGccaagaaucaGCCCGc -3'
miRNA:   3'- -UGCGagCUUCCAgC-UCGCGCU----------UGGGC- -5'
16234 5' -57.4 NC_004065.1 + 179037 0.66 0.919776
Target:  5'- uCGCUCGGAGGgcuaUCGAGggacCGCcGAuGCCCa -3'
miRNA:   3'- uGCGAGCUUCC----AGCUC----GCG-CU-UGGGc -5'
16234 5' -57.4 NC_004065.1 + 78297 0.66 0.919776
Target:  5'- gGCuCUCGAGGGccUCGGacuGCGUGGgcgACCCGa -3'
miRNA:   3'- -UGcGAGCUUCC--AGCU---CGCGCU---UGGGC- -5'
16234 5' -57.4 NC_004065.1 + 79340 0.66 0.919776
Target:  5'- uGCGCgCGGAGGaCGAGgGCG-GCgCGg -3'
miRNA:   3'- -UGCGaGCUUCCaGCUCgCGCuUGgGC- -5'
16234 5' -57.4 NC_004065.1 + 199107 0.67 0.908583
Target:  5'- uGCGCucccggcgaugUCGAcGGacaCGAGUGCGAcCCCGa -3'
miRNA:   3'- -UGCG-----------AGCUuCCa--GCUCGCGCUuGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.