miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16234 5' -57.4 NC_004065.1 + 126300 0.67 0.908583
Target:  5'- gACGC-CGAAGGa--GGCGCGucguCCCGa -3'
miRNA:   3'- -UGCGaGCUUCCagcUCGCGCuu--GGGC- -5'
16234 5' -57.4 NC_004065.1 + 51560 0.67 0.902663
Target:  5'- cUGuCUCGAGGGUCGAuugGagGCGAACCg- -3'
miRNA:   3'- uGC-GAGCUUCCAGCU---Cg-CGCUUGGgc -5'
16234 5' -57.4 NC_004065.1 + 129970 0.67 0.902663
Target:  5'- cACGCgagCGAGGGUCaGGCucuGCGGAggauaccgcCCCGa -3'
miRNA:   3'- -UGCGa--GCUUCCAGcUCG---CGCUU---------GGGC- -5'
16234 5' -57.4 NC_004065.1 + 74798 0.67 0.902663
Target:  5'- aGCGCUCGcgcAAGaugcugaCGAGCGUGGagacGCCCGg -3'
miRNA:   3'- -UGCGAGC---UUCca-----GCUCGCGCU----UGGGC- -5'
16234 5' -57.4 NC_004065.1 + 211149 0.67 0.89653
Target:  5'- cCGUUCGggGGggagCGGGCGU--GCCgGg -3'
miRNA:   3'- uGCGAGCuuCCa---GCUCGCGcuUGGgC- -5'
16234 5' -57.4 NC_004065.1 + 128447 0.67 0.895905
Target:  5'- aGCGCggCGGAGGcguccgCGGGCGCGAucaggcuACCa- -3'
miRNA:   3'- -UGCGa-GCUUCCa-----GCUCGCGCU-------UGGgc -5'
16234 5' -57.4 NC_004065.1 + 209909 0.67 0.890187
Target:  5'- -gGUUCGAGGGUCGucagAGCGCccgucguuCCCGu -3'
miRNA:   3'- ugCGAGCUUCCAGC----UCGCGcuu-----GGGC- -5'
16234 5' -57.4 NC_004065.1 + 211518 0.67 0.890187
Target:  5'- -gGCUCuGAGGGUCGucgguGGCGaCGAcGCCCc -3'
miRNA:   3'- ugCGAG-CUUCCAGC-----UCGC-GCU-UGGGc -5'
16234 5' -57.4 NC_004065.1 + 106445 0.67 0.890187
Target:  5'- gGCGCUCGuc-GUCGAugcuggGCGUcGACCCGu -3'
miRNA:   3'- -UGCGAGCuucCAGCU------CGCGcUUGGGC- -5'
16234 5' -57.4 NC_004065.1 + 133369 0.67 0.890187
Target:  5'- gACGCgaaaccagUUGAAGaGUaCGGGCGCGAACgUGg -3'
miRNA:   3'- -UGCG--------AGCUUC-CA-GCUCGCGCUUGgGC- -5'
16234 5' -57.4 NC_004065.1 + 141867 0.67 0.883637
Target:  5'- cCGCUCGuccGG-CGAGCGgGcGCCCc -3'
miRNA:   3'- uGCGAGCuu-CCaGCUCGCgCuUGGGc -5'
16234 5' -57.4 NC_004065.1 + 35226 0.67 0.883637
Target:  5'- gGCGUUCaGGGGcUCGAcgaucgcccuGCGCG-ACCCGg -3'
miRNA:   3'- -UGCGAGcUUCC-AGCU----------CGCGCuUGGGC- -5'
16234 5' -57.4 NC_004065.1 + 98029 0.67 0.883637
Target:  5'- -aGCUCGGAGacGUCGAuCGCGGACUg- -3'
miRNA:   3'- ugCGAGCUUC--CAGCUcGCGCUUGGgc -5'
16234 5' -57.4 NC_004065.1 + 89977 0.67 0.883637
Target:  5'- -aGC-CGGAGGgacgacgaCGGGaGCGAACCCGa -3'
miRNA:   3'- ugCGaGCUUCCa-------GCUCgCGCUUGGGC- -5'
16234 5' -57.4 NC_004065.1 + 185846 0.67 0.883637
Target:  5'- gACGUauccCG-AGGUUGAgGCGCGAGCCUu -3'
miRNA:   3'- -UGCGa---GCuUCCAGCU-CGCGCUUGGGc -5'
16234 5' -57.4 NC_004065.1 + 146821 0.68 0.876883
Target:  5'- gGCGCgcaCGggGGacUCGAGaGCGGGCCg- -3'
miRNA:   3'- -UGCGa--GCuuCC--AGCUCgCGCUUGGgc -5'
16234 5' -57.4 NC_004065.1 + 108565 0.68 0.876883
Target:  5'- cGCGC-CGAccgaccuGGUCGucgaAGUGuCGAACCCGa -3'
miRNA:   3'- -UGCGaGCUu------CCAGC----UCGC-GCUUGGGC- -5'
16234 5' -57.4 NC_004065.1 + 33063 0.68 0.876883
Target:  5'- gGCGC-CGccuuGuGUCuggGAGCGUGGACCCGg -3'
miRNA:   3'- -UGCGaGCuu--C-CAG---CUCGCGCUUGGGC- -5'
16234 5' -57.4 NC_004065.1 + 191414 0.68 0.86993
Target:  5'- -aGUaUGAAGGUCGcGCGCGAgauguGCUCGg -3'
miRNA:   3'- ugCGaGCUUCCAGCuCGCGCU-----UGGGC- -5'
16234 5' -57.4 NC_004065.1 + 155135 0.68 0.86993
Target:  5'- cGCGCccgCGAguacgAGGUCG-GCuGCGAccuGCCCGu -3'
miRNA:   3'- -UGCGa--GCU-----UCCAGCuCG-CGCU---UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.