miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16235 3' -52.9 NC_004065.1 + 197145 0.66 0.993507
Target:  5'- cGGCaUCUCGGAcgagGAGCGcgacCUGUCCAUCg -3'
miRNA:   3'- uCUG-AGGGUCU----UUUGCc---GACAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 148790 0.66 0.993507
Target:  5'- cAGAaUCCCAGGAAcgacgacCGGCaGUCCGaguCCg -3'
miRNA:   3'- -UCUgAGGGUCUUUu------GCCGaCAGGU---GG- -5'
16235 3' -52.9 NC_004065.1 + 118659 0.66 0.993507
Target:  5'- cGGACgacgacgccucgUCCUGGGAcGACGcGUUGUCCugCu -3'
miRNA:   3'- -UCUG------------AGGGUCUU-UUGC-CGACAGGugG- -5'
16235 3' -52.9 NC_004065.1 + 17791 0.66 0.993416
Target:  5'- cAGACcCCCGGGGAGCuGGUcguagaguauagaUGUCCGguCCc -3'
miRNA:   3'- -UCUGaGGGUCUUUUG-CCG-------------ACAGGU--GG- -5'
16235 3' -52.9 NC_004065.1 + 129573 0.66 0.993232
Target:  5'- cGGugUUCCGGGuggagaugccggagAAGCGGCacgUGUUCugCg -3'
miRNA:   3'- -UCugAGGGUCU--------------UUUGCCG---ACAGGugG- -5'
16235 3' -52.9 NC_004065.1 + 94522 0.66 0.992553
Target:  5'- uGGACUCggaguaCCAGAucACGGCgaaCCugCg -3'
miRNA:   3'- -UCUGAG------GGUCUuuUGCCGacaGGugG- -5'
16235 3' -52.9 NC_004065.1 + 82294 0.66 0.992553
Target:  5'- uGGuCUCCCuGAGGgcccguagcGCGGC-GUCCAgCu -3'
miRNA:   3'- -UCuGAGGGuCUUU---------UGCCGaCAGGUgG- -5'
16235 3' -52.9 NC_004065.1 + 22803 0.66 0.992553
Target:  5'- cGGCUCUguGGGggUGGUUGgacauuUCCGCUc -3'
miRNA:   3'- uCUGAGGguCUUuuGCCGAC------AGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 159317 0.66 0.992553
Target:  5'- cGugUCCguGcgcAGGCGGUuggUGUCCACg -3'
miRNA:   3'- uCugAGGguCu--UUUGCCG---ACAGGUGg -5'
16235 3' -52.9 NC_004065.1 + 107480 0.66 0.992553
Target:  5'- aAGGCUCCgaCGGuguACGGCgccuucagaUCCACCu -3'
miRNA:   3'- -UCUGAGG--GUCuuuUGCCGac-------AGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 55404 0.66 0.992553
Target:  5'- cGGACagaagaCCGGccuGAugGGCUGUCCGg- -3'
miRNA:   3'- -UCUGag----GGUCu--UUugCCGACAGGUgg -5'
16235 3' -52.9 NC_004065.1 + 82764 0.66 0.991491
Target:  5'- aAGACggcCUCGGAGAGCaGGC-GUCCgguggcGCCg -3'
miRNA:   3'- -UCUGa--GGGUCUUUUG-CCGaCAGG------UGG- -5'
16235 3' -52.9 NC_004065.1 + 47582 0.66 0.991491
Target:  5'- gAGGCUacgucaCCAGGAccccCGGCUGcCCAgCg -3'
miRNA:   3'- -UCUGAg-----GGUCUUuu--GCCGACaGGUgG- -5'
16235 3' -52.9 NC_004065.1 + 219395 0.66 0.991491
Target:  5'- aAGACUCCCAGGAAuacuaauaGCaucuGUUG-CCACg -3'
miRNA:   3'- -UCUGAGGGUCUUU--------UGc---CGACaGGUGg -5'
16235 3' -52.9 NC_004065.1 + 137049 0.66 0.991491
Target:  5'- -aGCUCUugaagaUAGAAccGAC-GCUGUCCGCCa -3'
miRNA:   3'- ucUGAGG------GUCUU--UUGcCGACAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 161617 0.66 0.991491
Target:  5'- -cGCUcCCCGGGGAugGGgUGcUgCGCCa -3'
miRNA:   3'- ucUGA-GGGUCUUUugCCgAC-AgGUGG- -5'
16235 3' -52.9 NC_004065.1 + 161511 0.66 0.991491
Target:  5'- cGGCcUCCGGGAGAU-GC-GUCCGCCg -3'
miRNA:   3'- uCUGaGGGUCUUUUGcCGaCAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 124821 0.66 0.991378
Target:  5'- cGGGCgUCCAcGAAcAGCGGCUccgccugGUCCAUCg -3'
miRNA:   3'- -UCUGaGGGU-CUU-UUGCCGA-------CAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 64923 0.66 0.991264
Target:  5'- gGGACgccgCCuCAGAGacGACGGCgccuacugacCCACCg -3'
miRNA:   3'- -UCUGa---GG-GUCUU--UUGCCGaca-------GGUGG- -5'
16235 3' -52.9 NC_004065.1 + 117903 0.66 0.991033
Target:  5'- gGGACgUCaucuucuGCuGGCUGUCCACCa -3'
miRNA:   3'- -UCUG-AGggucuuuUG-CCGACAGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.