miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16235 3' -52.9 NC_004065.1 + 149538 0.66 0.990312
Target:  5'- -uGCUCCCAGAGacgcGACaGGCgcucGUCCgACUc -3'
miRNA:   3'- ucUGAGGGUCUU----UUG-CCGa---CAGG-UGG- -5'
16235 3' -52.9 NC_004065.1 + 117903 0.66 0.991033
Target:  5'- gGGACgUCaucuucuGCuGGCUGUCCACCa -3'
miRNA:   3'- -UCUG-AGggucuuuUG-CCGACAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 40969 0.66 0.990312
Target:  5'- cGGACaCCCAGAAgaucgaGACGGCgugGUUgaacgacgacugCACCu -3'
miRNA:   3'- -UCUGaGGGUCUU------UUGCCGa--CAG------------GUGG- -5'
16235 3' -52.9 NC_004065.1 + 140456 0.66 0.989009
Target:  5'- aGGucCUUCCAGGAGACGGgCcG-CUACCg -3'
miRNA:   3'- -UCu-GAGGGUCUUUUGCC-GaCaGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 148790 0.66 0.993507
Target:  5'- cAGAaUCCCAGGAAcgacgacCGGCaGUCCGaguCCg -3'
miRNA:   3'- -UCUgAGGGUCUUUu------GCCGaCAGGU---GG- -5'
16235 3' -52.9 NC_004065.1 + 176550 0.66 0.989009
Target:  5'- --cUUCCCGGAGAGCucGGCgGUCUugaACCu -3'
miRNA:   3'- ucuGAGGGUCUUUUG--CCGaCAGG---UGG- -5'
16235 3' -52.9 NC_004065.1 + 72793 0.66 0.990187
Target:  5'- -cGCUCCUgguucucgcugcaAGAGGAuCGGUUGcgCCACCu -3'
miRNA:   3'- ucUGAGGG-------------UCUUUU-GCCGACa-GGUGG- -5'
16235 3' -52.9 NC_004065.1 + 64923 0.66 0.991264
Target:  5'- gGGACgccgCCuCAGAGacGACGGCgccuacugacCCACCg -3'
miRNA:   3'- -UCUGa---GG-GUCUU--UUGCCGaca-------GGUGG- -5'
16235 3' -52.9 NC_004065.1 + 124821 0.66 0.991378
Target:  5'- cGGGCgUCCAcGAAcAGCGGCUccgccugGUCCAUCg -3'
miRNA:   3'- -UCUGaGGGU-CUU-UUGCCGA-------CAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 197145 0.66 0.993507
Target:  5'- cGGCaUCUCGGAcgagGAGCGcgacCUGUCCAUCg -3'
miRNA:   3'- uCUG-AGGGUCU----UUUGCc---GACAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 103947 0.66 0.990312
Target:  5'- cAG-UUCCUGGAccAGCGGCUGaccUUCACCg -3'
miRNA:   3'- -UCuGAGGGUCUu-UUGCCGAC---AGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 147854 0.66 0.990312
Target:  5'- aAGAUcCCCAGcuu-CGGCUGgugCCucGCCa -3'
miRNA:   3'- -UCUGaGGGUCuuuuGCCGACa--GG--UGG- -5'
16235 3' -52.9 NC_004065.1 + 161511 0.66 0.991491
Target:  5'- cGGCcUCCGGGAGAU-GC-GUCCGCCg -3'
miRNA:   3'- uCUGaGGGUCUUUUGcCGaCAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 219395 0.66 0.991491
Target:  5'- aAGACUCCCAGGAAuacuaauaGCaucuGUUG-CCACg -3'
miRNA:   3'- -UCUGAGGGUCUUU--------UGc---CGACaGGUGg -5'
16235 3' -52.9 NC_004065.1 + 31728 0.66 0.990312
Target:  5'- -aGCUCCCcgcacauGAGCGGgUGcaUCCGCCa -3'
miRNA:   3'- ucUGAGGGucu----UUUGCCgAC--AGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 55404 0.66 0.992553
Target:  5'- cGGACagaagaCCGGccuGAugGGCUGUCCGg- -3'
miRNA:   3'- -UCUGag----GGUCu--UUugCCGACAGGUgg -5'
16235 3' -52.9 NC_004065.1 + 118659 0.66 0.993507
Target:  5'- cGGACgacgacgccucgUCCUGGGAcGACGcGUUGUCCugCu -3'
miRNA:   3'- -UCUG------------AGGGUCUU-UUGC-CGACAGGugG- -5'
16235 3' -52.9 NC_004065.1 + 107480 0.66 0.992553
Target:  5'- aAGGCUCCgaCGGuguACGGCgccuucagaUCCACCu -3'
miRNA:   3'- -UCUGAGG--GUCuuuUGCCGac-------AGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 210828 0.66 0.989009
Target:  5'- cGGCUCgCGcAGAGCGGCcggaggUGUcCCGCCu -3'
miRNA:   3'- uCUGAGgGUcUUUUGCCG------ACA-GGUGG- -5'
16235 3' -52.9 NC_004065.1 + 196285 0.66 0.989009
Target:  5'- cGACUCCUgcAAGGC-GCUGggccgagCCACCg -3'
miRNA:   3'- uCUGAGGGucUUUUGcCGACa------GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.