miRNA display CGI


Results 21 - 40 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16235 3' -52.9 NC_004065.1 + 161511 0.66 0.991491
Target:  5'- cGGCcUCCGGGAGAU-GC-GUCCGCCg -3'
miRNA:   3'- uCUGaGGGUCUUUUGcCGaCAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 161617 0.66 0.991491
Target:  5'- -cGCUcCCCGGGGAugGGgUGcUgCGCCa -3'
miRNA:   3'- ucUGA-GGGUCUUUugCCgAC-AgGUGG- -5'
16235 3' -52.9 NC_004065.1 + 137049 0.66 0.991491
Target:  5'- -aGCUCUugaagaUAGAAccGAC-GCUGUCCGCCa -3'
miRNA:   3'- ucUGAGG------GUCUU--UUGcCGACAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 147854 0.66 0.990312
Target:  5'- aAGAUcCCCAGcuu-CGGCUGgugCCucGCCa -3'
miRNA:   3'- -UCUGaGGGUCuuuuGCCGACa--GG--UGG- -5'
16235 3' -52.9 NC_004065.1 + 129573 0.66 0.993232
Target:  5'- cGGugUUCCGGGuggagaugccggagAAGCGGCacgUGUUCugCg -3'
miRNA:   3'- -UCugAGGGUCU--------------UUUGCCG---ACAGGugG- -5'
16235 3' -52.9 NC_004065.1 + 103947 0.66 0.990312
Target:  5'- cAG-UUCCUGGAccAGCGGCUGaccUUCACCg -3'
miRNA:   3'- -UCuGAGGGUCUu-UUGCCGAC---AGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 219395 0.66 0.991491
Target:  5'- aAGACUCCCAGGAAuacuaauaGCaucuGUUG-CCACg -3'
miRNA:   3'- -UCUGAGGGUCUUU--------UGc---CGACaGGUGg -5'
16235 3' -52.9 NC_004065.1 + 124821 0.66 0.991378
Target:  5'- cGGGCgUCCAcGAAcAGCGGCUccgccugGUCCAUCg -3'
miRNA:   3'- -UCUGaGGGU-CUU-UUGCCGA-------CAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 64923 0.66 0.991264
Target:  5'- gGGACgccgCCuCAGAGacGACGGCgccuacugacCCACCg -3'
miRNA:   3'- -UCUGa---GG-GUCUU--UUGCCGaca-------GGUGG- -5'
16235 3' -52.9 NC_004065.1 + 118659 0.66 0.993507
Target:  5'- cGGACgacgacgccucgUCCUGGGAcGACGcGUUGUCCugCu -3'
miRNA:   3'- -UCUG------------AGGGUCUU-UUGC-CGACAGGugG- -5'
16235 3' -52.9 NC_004065.1 + 37508 0.67 0.982389
Target:  5'- cGACUCCaucucgaucaaCGGcucGCGGCUGUCCGa- -3'
miRNA:   3'- uCUGAGG-----------GUCuuuUGCCGACAGGUgg -5'
16235 3' -52.9 NC_004065.1 + 60133 0.67 0.981793
Target:  5'- cAGGCUCUUAGGGAAcuuggggaacggauCGGCgc-CCGCCa -3'
miRNA:   3'- -UCUGAGGGUCUUUU--------------GCCGacaGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 200293 0.67 0.981181
Target:  5'- -uGCUgUCCGGAGgaucucaucguccugGGCGGC-GUCCGCCg -3'
miRNA:   3'- ucUGA-GGGUCUU---------------UUGCCGaCAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 132324 0.67 0.985996
Target:  5'- uGGACagCCCGGGcgGCGGCggcagCgACCg -3'
miRNA:   3'- -UCUGa-GGGUCUuuUGCCGaca--GgUGG- -5'
16235 3' -52.9 NC_004065.1 + 212116 0.67 0.986644
Target:  5'- cGAUaUCCAGGAGGCgacagucucucgacgGGCguccGUCCGCCg -3'
miRNA:   3'- uCUGaGGGUCUUUUG---------------CCGa---CAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 58391 0.67 0.985996
Target:  5'- uGACgcuauaCCCuaAGAAcGGCGGCaUGUUCGCCg -3'
miRNA:   3'- uCUGa-----GGG--UCUU-UUGCCG-ACAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 53832 0.67 0.987573
Target:  5'- cAGACUCU---GAAACaGCUGccUCCGCCg -3'
miRNA:   3'- -UCUGAGGgucUUUUGcCGAC--AGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 29294 0.67 0.980342
Target:  5'- aGGAcCUCgCGGAAGACGGg-GUCCAa- -3'
miRNA:   3'- -UCU-GAGgGUCUUUUGCCgaCAGGUgg -5'
16235 3' -52.9 NC_004065.1 + 32269 0.67 0.980342
Target:  5'- cGGCUCCgAGu--GCccGCUGUCCGCg -3'
miRNA:   3'- uCUGAGGgUCuuuUGc-CGACAGGUGg -5'
16235 3' -52.9 NC_004065.1 + 209702 0.67 0.98159
Target:  5'- cGACUCacacaCAGAGGcuGCGGUcgucuucaccaaaGUCCACCa -3'
miRNA:   3'- uCUGAGg----GUCUUU--UGCCGa------------CAGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.