miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16235 3' -52.9 NC_004065.1 + 867 0.67 0.980342
Target:  5'- uGACUgCCGGgcGAgGGCgccCCGCCg -3'
miRNA:   3'- uCUGAgGGUCuuUUgCCGacaGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 3599 0.7 0.940489
Target:  5'- aGGACUCuCCuGGAGACGGCcGcCCAg- -3'
miRNA:   3'- -UCUGAG-GGuCUUUUGCCGaCaGGUgg -5'
16235 3' -52.9 NC_004065.1 + 6027 0.68 0.975724
Target:  5'- -aACUCCCAGAuuACaGCgGUCCGg- -3'
miRNA:   3'- ucUGAGGGUCUuuUGcCGaCAGGUgg -5'
16235 3' -52.9 NC_004065.1 + 12919 0.69 0.960799
Target:  5'- aGGGCUCCUgcuGGGu--CuGCUGUUCGCCg -3'
miRNA:   3'- -UCUGAGGG---UCUuuuGcCGACAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 17791 0.66 0.993416
Target:  5'- cAGACcCCCGGGGAGCuGGUcguagaguauagaUGUCCGguCCc -3'
miRNA:   3'- -UCUGaGGGUCUUUUG-CCG-------------ACAGGU--GG- -5'
16235 3' -52.9 NC_004065.1 + 21790 0.74 0.775904
Target:  5'- cGGCUCCuCGGucaaagcGCGGCUGUUCACa -3'
miRNA:   3'- uCUGAGG-GUCuuu----UGCCGACAGGUGg -5'
16235 3' -52.9 NC_004065.1 + 22803 0.66 0.992553
Target:  5'- cGGCUCUguGGGggUGGUUGgacauuUCCGCUc -3'
miRNA:   3'- uCUGAGGguCUUuuGCCGAC------AGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 26752 0.69 0.953352
Target:  5'- cGAaaCCgAGGAugauACGGCUacGUCCGCCa -3'
miRNA:   3'- uCUgaGGgUCUUu---UGCCGA--CAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 27282 0.69 0.953352
Target:  5'- cGGACggcgCUCGGGAcacgagccgaAACGGCcGUCCuACCa -3'
miRNA:   3'- -UCUGa---GGGUCUU----------UUGCCGaCAGG-UGG- -5'
16235 3' -52.9 NC_004065.1 + 27510 0.68 0.975724
Target:  5'- aGGACg-CCAGAuucaucGCGGCgUGccUCCACCa -3'
miRNA:   3'- -UCUGagGGUCUuu----UGCCG-AC--AGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 29294 0.67 0.980342
Target:  5'- aGGAcCUCgCGGAAGACGGg-GUCCAa- -3'
miRNA:   3'- -UCU-GAGgGUCUUUUGCCgaCAGGUgg -5'
16235 3' -52.9 NC_004065.1 + 30156 0.67 0.985996
Target:  5'- cGGACccagCCgCGGGAuguAGCGGCUGU-UACCa -3'
miRNA:   3'- -UCUGa---GG-GUCUU---UUGCCGACAgGUGG- -5'
16235 3' -52.9 NC_004065.1 + 31728 0.66 0.990312
Target:  5'- -aGCUCCCcgcacauGAGCGGgUGcaUCCGCCa -3'
miRNA:   3'- ucUGAGGGucu----UUUGCCgAC--AGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 32269 0.67 0.980342
Target:  5'- cGGCUCCgAGu--GCccGCUGUCCGCg -3'
miRNA:   3'- uCUGAGGgUCuuuUGc-CGACAGGUGg -5'
16235 3' -52.9 NC_004065.1 + 34031 0.68 0.964196
Target:  5'- cGACUCCCuGGAccaGGC-GUCCAUg -3'
miRNA:   3'- uCUGAGGGuCUUuugCCGaCAGGUGg -5'
16235 3' -52.9 NC_004065.1 + 35417 0.71 0.907859
Target:  5'- gAGAgUaCCgGGAcGACGGCuucgucuucgaggUGUCCACCg -3'
miRNA:   3'- -UCUgA-GGgUCUuUUGCCG-------------ACAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 36056 0.71 0.887285
Target:  5'- cGGCUCgcuCCAGAAGACGGgaaccccauugaaaCUG-CCACCu -3'
miRNA:   3'- uCUGAG---GGUCUUUUGCC--------------GACaGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 37499 0.72 0.875426
Target:  5'- cGGAC-CCCu---GGCGGCUcUCCGCCa -3'
miRNA:   3'- -UCUGaGGGucuuUUGCCGAcAGGUGG- -5'
16235 3' -52.9 NC_004065.1 + 37508 0.67 0.982389
Target:  5'- cGACUCCaucucgaucaaCGGcucGCGGCUGUCCGa- -3'
miRNA:   3'- uCUGAGG-----------GUCuuuUGCCGACAGGUgg -5'
16235 3' -52.9 NC_004065.1 + 38264 0.67 0.98409
Target:  5'- uGGACUCCgCGcaccaucaugaacGAAAACGGCguaUCgACCa -3'
miRNA:   3'- -UCUGAGG-GU-------------CUUUUGCCGac-AGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.