miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16235 5' -58.2 NC_004065.1 + 109524 0.66 0.89937
Target:  5'- ----cGGCGCCaagaGGGGgucgaugaaCCCCGGAUu -3'
miRNA:   3'- uuuuaCUGCGGg---UCCCa--------GGGGCCUGc -5'
16235 5' -58.2 NC_004065.1 + 118104 0.66 0.89937
Target:  5'- ----cGGCGCCCAuGGcGUCUCucgucgccgcgCGGACGa -3'
miRNA:   3'- uuuuaCUGCGGGU-CC-CAGGG-----------GCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 185245 0.66 0.89937
Target:  5'- -cGGUGuGCgGCCCAGG--CCUCGGACGa -3'
miRNA:   3'- uuUUAC-UG-CGGGUCCcaGGGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 186878 0.66 0.893083
Target:  5'- ----gGACGCCgGGGGggCCaucuaCGGGCa -3'
miRNA:   3'- uuuuaCUGCGGgUCCCa-GGg----GCCUGc -5'
16235 5' -58.2 NC_004065.1 + 34933 0.66 0.893083
Target:  5'- ---cUGACGCCCcugGGGGUCUgcgCCGcGCGc -3'
miRNA:   3'- uuuuACUGCGGG---UCCCAGG---GGCcUGC- -5'
16235 5' -58.2 NC_004065.1 + 32481 0.66 0.893083
Target:  5'- ----cGGCGCgCCAGuGUCCCUuGACGa -3'
miRNA:   3'- uuuuaCUGCG-GGUCcCAGGGGcCUGC- -5'
16235 5' -58.2 NC_004065.1 + 29866 0.66 0.893083
Target:  5'- uGAGAUGGuuCGUguaCCuGGGUCCCCaGGGCc -3'
miRNA:   3'- -UUUUACU--GCG---GGuCCCAGGGG-CCUGc -5'
16235 5' -58.2 NC_004065.1 + 422 0.66 0.886584
Target:  5'- -----cGCGCCCGGGGggugaaccCCCUGGAg- -3'
miRNA:   3'- uuuuacUGCGGGUCCCa-------GGGGCCUgc -5'
16235 5' -58.2 NC_004065.1 + 182438 0.66 0.886584
Target:  5'- ----gGGCaGCCgGGGGUCCUgGuGACGu -3'
miRNA:   3'- uuuuaCUG-CGGgUCCCAGGGgC-CUGC- -5'
16235 5' -58.2 NC_004065.1 + 228271 0.66 0.886584
Target:  5'- cGGGUGAgGCCCguAGGGUUCgCGGGg- -3'
miRNA:   3'- uUUUACUgCGGG--UCCCAGGgGCCUgc -5'
16235 5' -58.2 NC_004065.1 + 120876 0.66 0.886584
Target:  5'- ----cGGCuuGCCCGGGGUCa--GGGCGg -3'
miRNA:   3'- uuuuaCUG--CGGGUCCCAGgggCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 140373 0.66 0.879878
Target:  5'- ----cGACGCCCcucaagaaGGGGUUCCUGaACGu -3'
miRNA:   3'- uuuuaCUGCGGG--------UCCCAGGGGCcUGC- -5'
16235 5' -58.2 NC_004065.1 + 225791 0.66 0.879878
Target:  5'- --cAUGAaaCGCagAGGGUCCCCGcGGCc -3'
miRNA:   3'- uuuUACU--GCGggUCCCAGGGGC-CUGc -5'
16235 5' -58.2 NC_004065.1 + 51031 0.66 0.879878
Target:  5'- cGAGAUcGAUGCaCGGGGUgCUCUGGAUGg -3'
miRNA:   3'- -UUUUA-CUGCGgGUCCCA-GGGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 184905 0.67 0.872968
Target:  5'- gGAGcgGGCGCCCGGGuGgCUCgGGAgCGg -3'
miRNA:   3'- -UUUuaCUGCGGGUCC-CaGGGgCCU-GC- -5'
16235 5' -58.2 NC_004065.1 + 46372 0.67 0.865859
Target:  5'- -cGAUGugGgCCAccucagccGGUCCCUGGACu -3'
miRNA:   3'- uuUUACugCgGGUc-------CCAGGGGCCUGc -5'
16235 5' -58.2 NC_004065.1 + 84101 0.67 0.865859
Target:  5'- ----gGGCGgCCAGGGUCUgCaGGAUGc -3'
miRNA:   3'- uuuuaCUGCgGGUCCCAGGgG-CCUGC- -5'
16235 5' -58.2 NC_004065.1 + 85050 0.67 0.865859
Target:  5'- ---cUGACGCCgCAGcuGUUCCUGGACc -3'
miRNA:   3'- uuuuACUGCGG-GUCc-CAGGGGCCUGc -5'
16235 5' -58.2 NC_004065.1 + 83421 0.67 0.858555
Target:  5'- ----cGGCGUCCAGGGUgucgacggcguUgCCGGGCu -3'
miRNA:   3'- uuuuaCUGCGGGUCCCA-----------GgGGCCUGc -5'
16235 5' -58.2 NC_004065.1 + 113943 0.67 0.843386
Target:  5'- ----cGGCGCUCGGGGg-CUgGGACGg -3'
miRNA:   3'- uuuuaCUGCGGGUCCCagGGgCCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.