Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16235 | 5' | -58.2 | NC_004065.1 | + | 229557 | 1.06 | 0.004751 |
Target: 5'- uAAAAUGACGCCCAGGGUCCCCGGACGu -3' miRNA: 3'- -UUUUACUGCGGGUCCCAGGGGCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 210720 | 0.73 | 0.51666 |
Target: 5'- uAGGAUGACGCCC---GUCgCCGGACGg -3' miRNA: 3'- -UUUUACUGCGGGuccCAGgGGCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 99491 | 0.73 | 0.554754 |
Target: 5'- cGAGAUGcCGCCguuGGGGUCCCUGGcGCGc -3' miRNA: 3'- -UUUUACuGCGGg--UCCCAGGGGCC-UGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 464 | 0.72 | 0.564413 |
Target: 5'- -----aACGUCCGGGGaCCCUGGGCGu -3' miRNA: 3'- uuuuacUGCGGGUCCCaGGGGCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 109646 | 0.72 | 0.600488 |
Target: 5'- ----gGGCGUCCugcgcgacuccggcAGGGUCCuCCGGGCGc -3' miRNA: 3'- uuuuaCUGCGGG--------------UCCCAGG-GGCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 202932 | 0.7 | 0.710985 |
Target: 5'- ---uUGGCGUUCGGGGUCCUggggagaGGACGc -3' miRNA: 3'- uuuuACUGCGGGUCCCAGGGg------CCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 105220 | 0.7 | 0.710985 |
Target: 5'- ----gGACGCCCGGcGGaCgUCGGACGa -3' miRNA: 3'- uuuuaCUGCGGGUC-CCaGgGGCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 200421 | 0.69 | 0.730041 |
Target: 5'- ----cGACGCCaucuaucugguCGGGGacUCCCCGGAgGg -3' miRNA: 3'- uuuuaCUGCGG-----------GUCCC--AGGGGCCUgC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 87311 | 0.69 | 0.748783 |
Target: 5'- ----aGGCGCCCAGGa-CCCCcGACGc -3' miRNA: 3'- uuuuaCUGCGGGUCCcaGGGGcCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 50269 | 0.69 | 0.758016 |
Target: 5'- ----aGACGCCCGauucGGG-CCCCGaGACc -3' miRNA: 3'- uuuuaCUGCGGGU----CCCaGGGGC-CUGc -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 200200 | 0.69 | 0.758016 |
Target: 5'- ----cGACGCCuCGGaaUCUCCGGACGa -3' miRNA: 3'- uuuuaCUGCGG-GUCccAGGGGCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 163289 | 0.69 | 0.758016 |
Target: 5'- ----cGACGCcgCCGGGGUCCgacggcaCGGGCGc -3' miRNA: 3'- uuuuaCUGCG--GGUCCCAGGg------GCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 123873 | 0.69 | 0.760766 |
Target: 5'- ----cGACGCCUAGGGUCCacuaccuauuacuaaCCgcgaacgGGACGg -3' miRNA: 3'- uuuuaCUGCGGGUCCCAGG---------------GG-------CCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 59002 | 0.69 | 0.767146 |
Target: 5'- -uGAUGACGUUCAGuGUCCCgUGGGCa -3' miRNA: 3'- uuUUACUGCGGGUCcCAGGG-GCCUGc -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 229595 | 0.69 | 0.767146 |
Target: 5'- ----gGGCgGCuCCAGGGgguucaccCCCCGGGCGc -3' miRNA: 3'- uuuuaCUG-CG-GGUCCCa-------GGGGCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 163175 | 0.69 | 0.775269 |
Target: 5'- ----cGGCgGCCCAGGGaugcaugUCUCUGGACa -3' miRNA: 3'- uuuuaCUG-CGGGUCCC-------AGGGGCCUGc -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 94842 | 0.68 | 0.785066 |
Target: 5'- ----cGGCGCCCAacaGUCCCuCGGGCa -3' miRNA: 3'- uuuuaCUGCGGGUcc-CAGGG-GCCUGc -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 102554 | 0.68 | 0.802478 |
Target: 5'- -cGGUGGCGCCgGggucGGGUCCCgCGGcCa -3' miRNA: 3'- uuUUACUGCGGgU----CCCAGGG-GCCuGc -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 142715 | 0.68 | 0.810974 |
Target: 5'- ----cGGCGUCgGGGGUCC-UGGGCGc -3' miRNA: 3'- uuuuaCUGCGGgUCCCAGGgGCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 120532 | 0.68 | 0.818492 |
Target: 5'- ----cGAUGUCgAGGGUCUCCGGugugccgGCGg -3' miRNA: 3'- uuuuaCUGCGGgUCCCAGGGGCC-------UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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