miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16235 5' -58.2 NC_004065.1 + 422 0.66 0.886584
Target:  5'- -----cGCGCCCGGGGggugaaccCCCUGGAg- -3'
miRNA:   3'- uuuuacUGCGGGUCCCa-------GGGGCCUgc -5'
16235 5' -58.2 NC_004065.1 + 464 0.72 0.564413
Target:  5'- -----aACGUCCGGGGaCCCUGGGCGu -3'
miRNA:   3'- uuuuacUGCGGGUCCCaGGGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 29866 0.66 0.893083
Target:  5'- uGAGAUGGuuCGUguaCCuGGGUCCCCaGGGCc -3'
miRNA:   3'- -UUUUACU--GCG---GGuCCCAGGGG-CCUGc -5'
16235 5' -58.2 NC_004065.1 + 32481 0.66 0.893083
Target:  5'- ----cGGCGCgCCAGuGUCCCUuGACGa -3'
miRNA:   3'- uuuuaCUGCG-GGUCcCAGGGGcCUGC- -5'
16235 5' -58.2 NC_004065.1 + 34933 0.66 0.893083
Target:  5'- ---cUGACGCCCcugGGGGUCUgcgCCGcGCGc -3'
miRNA:   3'- uuuuACUGCGGG---UCCCAGG---GGCcUGC- -5'
16235 5' -58.2 NC_004065.1 + 46372 0.67 0.865859
Target:  5'- -cGAUGugGgCCAccucagccGGUCCCUGGACu -3'
miRNA:   3'- uuUUACugCgGGUc-------CCAGGGGCCUGc -5'
16235 5' -58.2 NC_004065.1 + 50269 0.69 0.758016
Target:  5'- ----aGACGCCCGauucGGG-CCCCGaGACc -3'
miRNA:   3'- uuuuaCUGCGGGU----CCCaGGGGC-CUGc -5'
16235 5' -58.2 NC_004065.1 + 51031 0.66 0.879878
Target:  5'- cGAGAUcGAUGCaCGGGGUgCUCUGGAUGg -3'
miRNA:   3'- -UUUUA-CUGCGgGUCCCA-GGGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 59002 0.69 0.767146
Target:  5'- -uGAUGACGUUCAGuGUCCCgUGGGCa -3'
miRNA:   3'- uuUUACUGCGGGUCcCAGGG-GCCUGc -5'
16235 5' -58.2 NC_004065.1 + 67006 0.67 0.843386
Target:  5'- ----cGGCGCCCGuguacGGG-CCCCGcGCGg -3'
miRNA:   3'- uuuuaCUGCGGGU-----CCCaGGGGCcUGC- -5'
16235 5' -58.2 NC_004065.1 + 72907 0.68 0.818492
Target:  5'- -cGAUGAUGCCCccgcugaAGGcGcCCCCGG-CGg -3'
miRNA:   3'- uuUUACUGCGGG-------UCC-CaGGGGCCuGC- -5'
16235 5' -58.2 NC_004065.1 + 83421 0.67 0.858555
Target:  5'- ----cGGCGUCCAGGGUgucgacggcguUgCCGGGCu -3'
miRNA:   3'- uuuuaCUGCGGGUCCCA-----------GgGGCCUGc -5'
16235 5' -58.2 NC_004065.1 + 84101 0.67 0.865859
Target:  5'- ----gGGCGgCCAGGGUCUgCaGGAUGc -3'
miRNA:   3'- uuuuaCUGCgGGUCCCAGGgG-CCUGC- -5'
16235 5' -58.2 NC_004065.1 + 85050 0.67 0.865859
Target:  5'- ---cUGACGCCgCAGcuGUUCCUGGACc -3'
miRNA:   3'- uuuuACUGCGG-GUCc-CAGGGGCCUGc -5'
16235 5' -58.2 NC_004065.1 + 87311 0.69 0.748783
Target:  5'- ----aGGCGCCCAGGa-CCCCcGACGc -3'
miRNA:   3'- uuuuaCUGCGGGUCCcaGGGGcCUGC- -5'
16235 5' -58.2 NC_004065.1 + 94842 0.68 0.785066
Target:  5'- ----cGGCGCCCAacaGUCCCuCGGGCa -3'
miRNA:   3'- uuuuaCUGCGGGUcc-CAGGG-GCCUGc -5'
16235 5' -58.2 NC_004065.1 + 99491 0.73 0.554754
Target:  5'- cGAGAUGcCGCCguuGGGGUCCCUGGcGCGc -3'
miRNA:   3'- -UUUUACuGCGGg--UCCCAGGGGCC-UGC- -5'
16235 5' -58.2 NC_004065.1 + 102554 0.68 0.802478
Target:  5'- -cGGUGGCGCCgGggucGGGUCCCgCGGcCa -3'
miRNA:   3'- uuUUACUGCGGgU----CCCAGGG-GCCuGc -5'
16235 5' -58.2 NC_004065.1 + 105220 0.7 0.710985
Target:  5'- ----gGACGCCCGGcGGaCgUCGGACGa -3'
miRNA:   3'- uuuuaCUGCGGGUC-CCaGgGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 109524 0.66 0.89937
Target:  5'- ----cGGCGCCaagaGGGGgucgaugaaCCCCGGAUu -3'
miRNA:   3'- uuuuaCUGCGGg---UCCCa--------GGGGCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.