Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16235 | 5' | -58.2 | NC_004065.1 | + | 109646 | 0.72 | 0.600488 |
Target: 5'- ----gGGCGUCCugcgcgacuccggcAGGGUCCuCCGGGCGc -3' miRNA: 3'- uuuuaCUGCGGG--------------UCCCAGG-GGCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 113943 | 0.67 | 0.843386 |
Target: 5'- ----cGGCGCUCGGGGg-CUgGGACGg -3' miRNA: 3'- uuuuaCUGCGGGUCCCagGGgCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 118104 | 0.66 | 0.89937 |
Target: 5'- ----cGGCGCCCAuGGcGUCUCucgucgccgcgCGGACGa -3' miRNA: 3'- uuuuaCUGCGGGU-CC-CAGGG-----------GCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 120532 | 0.68 | 0.818492 |
Target: 5'- ----cGAUGUCgAGGGUCUCCGGugugccgGCGg -3' miRNA: 3'- uuuuaCUGCGGgUCCCAGGGGCC-------UGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 120876 | 0.66 | 0.886584 |
Target: 5'- ----cGGCuuGCCCGGGGUCa--GGGCGg -3' miRNA: 3'- uuuuaCUG--CGGGUCCCAGgggCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 123873 | 0.69 | 0.760766 |
Target: 5'- ----cGACGCCUAGGGUCCacuaccuauuacuaaCCgcgaacgGGACGg -3' miRNA: 3'- uuuuaCUGCGGGUCCCAGG---------------GG-------CCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 139897 | 0.68 | 0.827508 |
Target: 5'- ----gGugGCCgCGGGGcCUCCGGcCGg -3' miRNA: 3'- uuuuaCugCGG-GUCCCaGGGGCCuGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 140373 | 0.66 | 0.879878 |
Target: 5'- ----cGACGCCCcucaagaaGGGGUUCCUGaACGu -3' miRNA: 3'- uuuuaCUGCGGG--------UCCCAGGGGCcUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 142715 | 0.68 | 0.810974 |
Target: 5'- ----cGGCGUCgGGGGUCC-UGGGCGc -3' miRNA: 3'- uuuuaCUGCGGgUCCCAGGgGCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 163175 | 0.69 | 0.775269 |
Target: 5'- ----cGGCgGCCCAGGGaugcaugUCUCUGGACa -3' miRNA: 3'- uuuuaCUG-CGGGUCCC-------AGGGGCCUGc -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 163289 | 0.69 | 0.758016 |
Target: 5'- ----cGACGCcgCCGGGGUCCgacggcaCGGGCGc -3' miRNA: 3'- uuuuaCUGCG--GGUCCCAGGg------GCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 167532 | 0.67 | 0.835533 |
Target: 5'- ---cUGugGUagCGGGGUCCuuGGugGu -3' miRNA: 3'- uuuuACugCGg-GUCCCAGGggCCugC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 182438 | 0.66 | 0.886584 |
Target: 5'- ----gGGCaGCCgGGGGUCCUgGuGACGu -3' miRNA: 3'- uuuuaCUG-CGGgUCCCAGGGgC-CUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 184905 | 0.67 | 0.872968 |
Target: 5'- gGAGcgGGCGCCCGGGuGgCUCgGGAgCGg -3' miRNA: 3'- -UUUuaCUGCGGGUCC-CaGGGgCCU-GC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 185245 | 0.66 | 0.89937 |
Target: 5'- -cGGUGuGCgGCCCAGG--CCUCGGACGa -3' miRNA: 3'- uuUUAC-UG-CGGGUCCcaGGGGCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 186878 | 0.66 | 0.893083 |
Target: 5'- ----gGACGCCgGGGGggCCaucuaCGGGCa -3' miRNA: 3'- uuuuaCUGCGGgUCCCa-GGg----GCCUGc -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 200200 | 0.69 | 0.758016 |
Target: 5'- ----cGACGCCuCGGaaUCUCCGGACGa -3' miRNA: 3'- uuuuaCUGCGG-GUCccAGGGGCCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 200421 | 0.69 | 0.730041 |
Target: 5'- ----cGACGCCaucuaucugguCGGGGacUCCCCGGAgGg -3' miRNA: 3'- uuuuaCUGCGG-----------GUCCC--AGGGGCCUgC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 202932 | 0.7 | 0.710985 |
Target: 5'- ---uUGGCGUUCGGGGUCCUggggagaGGACGc -3' miRNA: 3'- uuuuACUGCGGGUCCCAGGGg------CCUGC- -5' |
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16235 | 5' | -58.2 | NC_004065.1 | + | 210720 | 0.73 | 0.51666 |
Target: 5'- uAGGAUGACGCCC---GUCgCCGGACGg -3' miRNA: 3'- -UUUUACUGCGGGuccCAGgGGCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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