miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16235 5' -58.2 NC_004065.1 + 229595 0.69 0.767146
Target:  5'- ----gGGCgGCuCCAGGGgguucaccCCCCGGGCGc -3'
miRNA:   3'- uuuuaCUG-CG-GGUCCCa-------GGGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 229557 1.06 0.004751
Target:  5'- uAAAAUGACGCCCAGGGUCCCCGGACGu -3'
miRNA:   3'- -UUUUACUGCGGGUCCCAGGGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 228271 0.66 0.886584
Target:  5'- cGGGUGAgGCCCguAGGGUUCgCGGGg- -3'
miRNA:   3'- uUUUACUgCGGG--UCCCAGGgGCCUgc -5'
16235 5' -58.2 NC_004065.1 + 225791 0.66 0.879878
Target:  5'- --cAUGAaaCGCagAGGGUCCCCGcGGCc -3'
miRNA:   3'- uuuUACU--GCGggUCCCAGGGGC-CUGc -5'
16235 5' -58.2 NC_004065.1 + 210720 0.73 0.51666
Target:  5'- uAGGAUGACGCCC---GUCgCCGGACGg -3'
miRNA:   3'- -UUUUACUGCGGGuccCAGgGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 202932 0.7 0.710985
Target:  5'- ---uUGGCGUUCGGGGUCCUggggagaGGACGc -3'
miRNA:   3'- uuuuACUGCGGGUCCCAGGGg------CCUGC- -5'
16235 5' -58.2 NC_004065.1 + 200421 0.69 0.730041
Target:  5'- ----cGACGCCaucuaucugguCGGGGacUCCCCGGAgGg -3'
miRNA:   3'- uuuuaCUGCGG-----------GUCCC--AGGGGCCUgC- -5'
16235 5' -58.2 NC_004065.1 + 200200 0.69 0.758016
Target:  5'- ----cGACGCCuCGGaaUCUCCGGACGa -3'
miRNA:   3'- uuuuaCUGCGG-GUCccAGGGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 186878 0.66 0.893083
Target:  5'- ----gGACGCCgGGGGggCCaucuaCGGGCa -3'
miRNA:   3'- uuuuaCUGCGGgUCCCa-GGg----GCCUGc -5'
16235 5' -58.2 NC_004065.1 + 185245 0.66 0.89937
Target:  5'- -cGGUGuGCgGCCCAGG--CCUCGGACGa -3'
miRNA:   3'- uuUUAC-UG-CGGGUCCcaGGGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 184905 0.67 0.872968
Target:  5'- gGAGcgGGCGCCCGGGuGgCUCgGGAgCGg -3'
miRNA:   3'- -UUUuaCUGCGGGUCC-CaGGGgCCU-GC- -5'
16235 5' -58.2 NC_004065.1 + 182438 0.66 0.886584
Target:  5'- ----gGGCaGCCgGGGGUCCUgGuGACGu -3'
miRNA:   3'- uuuuaCUG-CGGgUCCCAGGGgC-CUGC- -5'
16235 5' -58.2 NC_004065.1 + 167532 0.67 0.835533
Target:  5'- ---cUGugGUagCGGGGUCCuuGGugGu -3'
miRNA:   3'- uuuuACugCGg-GUCCCAGGggCCugC- -5'
16235 5' -58.2 NC_004065.1 + 163289 0.69 0.758016
Target:  5'- ----cGACGCcgCCGGGGUCCgacggcaCGGGCGc -3'
miRNA:   3'- uuuuaCUGCG--GGUCCCAGGg------GCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 163175 0.69 0.775269
Target:  5'- ----cGGCgGCCCAGGGaugcaugUCUCUGGACa -3'
miRNA:   3'- uuuuaCUG-CGGGUCCC-------AGGGGCCUGc -5'
16235 5' -58.2 NC_004065.1 + 142715 0.68 0.810974
Target:  5'- ----cGGCGUCgGGGGUCC-UGGGCGc -3'
miRNA:   3'- uuuuaCUGCGGgUCCCAGGgGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 140373 0.66 0.879878
Target:  5'- ----cGACGCCCcucaagaaGGGGUUCCUGaACGu -3'
miRNA:   3'- uuuuaCUGCGGG--------UCCCAGGGGCcUGC- -5'
16235 5' -58.2 NC_004065.1 + 139897 0.68 0.827508
Target:  5'- ----gGugGCCgCGGGGcCUCCGGcCGg -3'
miRNA:   3'- uuuuaCugCGG-GUCCCaGGGGCCuGC- -5'
16235 5' -58.2 NC_004065.1 + 123873 0.69 0.760766
Target:  5'- ----cGACGCCUAGGGUCCacuaccuauuacuaaCCgcgaacgGGACGg -3'
miRNA:   3'- uuuuaCUGCGGGUCCCAGG---------------GG-------CCUGC- -5'
16235 5' -58.2 NC_004065.1 + 120876 0.66 0.886584
Target:  5'- ----cGGCuuGCCCGGGGUCa--GGGCGg -3'
miRNA:   3'- uuuuaCUG--CGGGUCCCAGgggCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.