miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16235 5' -58.2 NC_004065.1 + 32481 0.66 0.893083
Target:  5'- ----cGGCGCgCCAGuGUCCCUuGACGa -3'
miRNA:   3'- uuuuaCUGCG-GGUCcCAGGGGcCUGC- -5'
16235 5' -58.2 NC_004065.1 + 113943 0.67 0.843386
Target:  5'- ----cGGCGCUCGGGGg-CUgGGACGg -3'
miRNA:   3'- uuuuaCUGCGGGUCCCagGGgCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 46372 0.67 0.865859
Target:  5'- -cGAUGugGgCCAccucagccGGUCCCUGGACu -3'
miRNA:   3'- uuUUACugCgGGUc-------CCAGGGGCCUGc -5'
16235 5' -58.2 NC_004065.1 + 184905 0.67 0.872968
Target:  5'- gGAGcgGGCGCCCGGGuGgCUCgGGAgCGg -3'
miRNA:   3'- -UUUuaCUGCGGGUCC-CaGGGgCCU-GC- -5'
16235 5' -58.2 NC_004065.1 + 51031 0.66 0.879878
Target:  5'- cGAGAUcGAUGCaCGGGGUgCUCUGGAUGg -3'
miRNA:   3'- -UUUUA-CUGCGgGUCCCA-GGGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 225791 0.66 0.879878
Target:  5'- --cAUGAaaCGCagAGGGUCCCCGcGGCc -3'
miRNA:   3'- uuuUACU--GCGggUCCCAGGGGC-CUGc -5'
16235 5' -58.2 NC_004065.1 + 120876 0.66 0.886584
Target:  5'- ----cGGCuuGCCCGGGGUCa--GGGCGg -3'
miRNA:   3'- uuuuaCUG--CGGGUCCCAGgggCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 182438 0.66 0.886584
Target:  5'- ----gGGCaGCCgGGGGUCCUgGuGACGu -3'
miRNA:   3'- uuuuaCUG-CGGgUCCCAGGGgC-CUGC- -5'
16235 5' -58.2 NC_004065.1 + 228271 0.66 0.886584
Target:  5'- cGGGUGAgGCCCguAGGGUUCgCGGGg- -3'
miRNA:   3'- uUUUACUgCGGG--UCCCAGGgGCCUgc -5'
16235 5' -58.2 NC_004065.1 + 67006 0.67 0.843386
Target:  5'- ----cGGCGCCCGuguacGGG-CCCCGcGCGg -3'
miRNA:   3'- uuuuaCUGCGGGU-----CCCaGGGGCcUGC- -5'
16235 5' -58.2 NC_004065.1 + 167532 0.67 0.835533
Target:  5'- ---cUGugGUagCGGGGUCCuuGGugGu -3'
miRNA:   3'- uuuuACugCGg-GUCCCAGGggCCugC- -5'
16235 5' -58.2 NC_004065.1 + 120532 0.68 0.818492
Target:  5'- ----cGAUGUCgAGGGUCUCCGGugugccgGCGg -3'
miRNA:   3'- uuuuaCUGCGGgUCCCAGGGGCC-------UGC- -5'
16235 5' -58.2 NC_004065.1 + 109646 0.72 0.600488
Target:  5'- ----gGGCGUCCugcgcgacuccggcAGGGUCCuCCGGGCGc -3'
miRNA:   3'- uuuuaCUGCGGG--------------UCCCAGG-GGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 50269 0.69 0.758016
Target:  5'- ----aGACGCCCGauucGGG-CCCCGaGACc -3'
miRNA:   3'- uuuuaCUGCGGGU----CCCaGGGGC-CUGc -5'
16235 5' -58.2 NC_004065.1 + 163289 0.69 0.758016
Target:  5'- ----cGACGCcgCCGGGGUCCgacggcaCGGGCGc -3'
miRNA:   3'- uuuuaCUGCG--GGUCCCAGGg------GCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 200200 0.69 0.758016
Target:  5'- ----cGACGCCuCGGaaUCUCCGGACGa -3'
miRNA:   3'- uuuuaCUGCGG-GUCccAGGGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 229595 0.69 0.767146
Target:  5'- ----gGGCgGCuCCAGGGgguucaccCCCCGGGCGc -3'
miRNA:   3'- uuuuaCUG-CG-GGUCCCa-------GGGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 163175 0.69 0.775269
Target:  5'- ----cGGCgGCCCAGGGaugcaugUCUCUGGACa -3'
miRNA:   3'- uuuuaCUG-CGGGUCCC-------AGGGGCCUGc -5'
16235 5' -58.2 NC_004065.1 + 142715 0.68 0.810974
Target:  5'- ----cGGCGUCgGGGGUCC-UGGGCGc -3'
miRNA:   3'- uuuuaCUGCGGgUCCCAGGgGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 72907 0.68 0.818492
Target:  5'- -cGAUGAUGCCCccgcugaAGGcGcCCCCGG-CGg -3'
miRNA:   3'- uuUUACUGCGGG-------UCC-CaGGGGCCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.