miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16235 5' -58.2 NC_004065.1 + 210720 0.73 0.51666
Target:  5'- uAGGAUGACGCCC---GUCgCCGGACGg -3'
miRNA:   3'- -UUUUACUGCGGGuccCAGgGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 422 0.66 0.886584
Target:  5'- -----cGCGCCCGGGGggugaaccCCCUGGAg- -3'
miRNA:   3'- uuuuacUGCGGGUCCCa-------GGGGCCUgc -5'
16235 5' -58.2 NC_004065.1 + 34933 0.66 0.893083
Target:  5'- ---cUGACGCCCcugGGGGUCUgcgCCGcGCGc -3'
miRNA:   3'- uuuuACUGCGGG---UCCCAGG---GGCcUGC- -5'
16235 5' -58.2 NC_004065.1 + 109524 0.66 0.89937
Target:  5'- ----cGGCGCCaagaGGGGgucgaugaaCCCCGGAUu -3'
miRNA:   3'- uuuuaCUGCGGg---UCCCa--------GGGGCCUGc -5'
16235 5' -58.2 NC_004065.1 + 105220 0.7 0.710985
Target:  5'- ----gGACGCCCGGcGGaCgUCGGACGa -3'
miRNA:   3'- uuuuaCUGCGGGUC-CCaGgGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 200421 0.69 0.730041
Target:  5'- ----cGACGCCaucuaucugguCGGGGacUCCCCGGAgGg -3'
miRNA:   3'- uuuuaCUGCGG-----------GUCCC--AGGGGCCUgC- -5'
16235 5' -58.2 NC_004065.1 + 123873 0.69 0.760766
Target:  5'- ----cGACGCCUAGGGUCCacuaccuauuacuaaCCgcgaacgGGACGg -3'
miRNA:   3'- uuuuaCUGCGGGUCCCAGG---------------GG-------CCUGC- -5'
16235 5' -58.2 NC_004065.1 + 59002 0.69 0.767146
Target:  5'- -uGAUGACGUUCAGuGUCCCgUGGGCa -3'
miRNA:   3'- uuUUACUGCGGGUCcCAGGG-GCCUGc -5'
16235 5' -58.2 NC_004065.1 + 139897 0.68 0.827508
Target:  5'- ----gGugGCCgCGGGGcCUCCGGcCGg -3'
miRNA:   3'- uuuuaCugCGG-GUCCCaGGGGCCuGC- -5'
16235 5' -58.2 NC_004065.1 + 84101 0.67 0.865859
Target:  5'- ----gGGCGgCCAGGGUCUgCaGGAUGc -3'
miRNA:   3'- uuuuaCUGCgGGUCCCAGGgG-CCUGC- -5'
16235 5' -58.2 NC_004065.1 + 102554 0.68 0.802478
Target:  5'- -cGGUGGCGCCgGggucGGGUCCCgCGGcCa -3'
miRNA:   3'- uuUUACUGCGGgU----CCCAGGG-GCCuGc -5'
16235 5' -58.2 NC_004065.1 + 99491 0.73 0.554754
Target:  5'- cGAGAUGcCGCCguuGGGGUCCCUGGcGCGc -3'
miRNA:   3'- -UUUUACuGCGGg--UCCCAGGGGCC-UGC- -5'
16235 5' -58.2 NC_004065.1 + 85050 0.67 0.865859
Target:  5'- ---cUGACGCCgCAGcuGUUCCUGGACc -3'
miRNA:   3'- uuuuACUGCGG-GUCc-CAGGGGCCUGc -5'
16235 5' -58.2 NC_004065.1 + 464 0.72 0.564413
Target:  5'- -----aACGUCCGGGGaCCCUGGGCGu -3'
miRNA:   3'- uuuuacUGCGGGUCCCaGGGGCCUGC- -5'
16235 5' -58.2 NC_004065.1 + 94842 0.68 0.785066
Target:  5'- ----cGGCGCCCAacaGUCCCuCGGGCa -3'
miRNA:   3'- uuuuaCUGCGGGUcc-CAGGG-GCCUGc -5'
16235 5' -58.2 NC_004065.1 + 140373 0.66 0.879878
Target:  5'- ----cGACGCCCcucaagaaGGGGUUCCUGaACGu -3'
miRNA:   3'- uuuuaCUGCGGG--------UCCCAGGGGCcUGC- -5'
16235 5' -58.2 NC_004065.1 + 29866 0.66 0.893083
Target:  5'- uGAGAUGGuuCGUguaCCuGGGUCCCCaGGGCc -3'
miRNA:   3'- -UUUUACU--GCG---GGuCCCAGGGG-CCUGc -5'
16235 5' -58.2 NC_004065.1 + 202932 0.7 0.710985
Target:  5'- ---uUGGCGUUCGGGGUCCUggggagaGGACGc -3'
miRNA:   3'- uuuuACUGCGGGUCCCAGGGg------CCUGC- -5'
16235 5' -58.2 NC_004065.1 + 87311 0.69 0.748783
Target:  5'- ----aGGCGCCCAGGa-CCCCcGACGc -3'
miRNA:   3'- uuuuaCUGCGGGUCCcaGGGGcCUGC- -5'
16235 5' -58.2 NC_004065.1 + 83421 0.67 0.858555
Target:  5'- ----cGGCGUCCAGGGUgucgacggcguUgCCGGGCu -3'
miRNA:   3'- uuuuaCUGCGGGUCCCA-----------GgGGCCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.