miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16236 3' -59.8 NC_004065.1 + 178206 0.66 0.885982
Target:  5'- gGuuGggGCGCaUCcccaUGCGGGCGCGUGUc -3'
miRNA:   3'- -CggCa-UGUGcAGa---GCGCCCGCGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 168624 0.66 0.885982
Target:  5'- uGCUGgcGCugGUgC-CGCGGGCGgagccgGCGCg -3'
miRNA:   3'- -CGGCa-UGugCA-GaGCGCCCGCg-----CGCG- -5'
16236 3' -59.8 NC_004065.1 + 135057 0.66 0.885982
Target:  5'- aGgCGUACGCGgcagC-CGCGGaGCGgGCcccGCa -3'
miRNA:   3'- -CgGCAUGUGCa---GaGCGCC-CGCgCG---CG- -5'
16236 3' -59.8 NC_004065.1 + 74778 0.66 0.885982
Target:  5'- uCCGcagggaGUCUCGCGGcaGCGCucGCGCa -3'
miRNA:   3'- cGGCaugug-CAGAGCGCC--CGCG--CGCG- -5'
16236 3' -59.8 NC_004065.1 + 188389 0.66 0.885982
Target:  5'- -aCGUGCAgguagucgcucuCGUCcUGCGGGCGagaGgGCg -3'
miRNA:   3'- cgGCAUGU------------GCAGaGCGCCCGCg--CgCG- -5'
16236 3' -59.8 NC_004065.1 + 99499 0.66 0.885982
Target:  5'- cGCCGUugGgGUCccuggCGCGcacgaggaGGaCGCGCGg -3'
miRNA:   3'- -CGGCAugUgCAGa----GCGC--------CC-GCGCGCg -5'
16236 3' -59.8 NC_004065.1 + 47135 0.66 0.885982
Target:  5'- uGCCGUcgguCucCGagCUCGUGGGCGaagGCGUg -3'
miRNA:   3'- -CGGCAu---Gu-GCa-GAGCGCCCGCg--CGCG- -5'
16236 3' -59.8 NC_004065.1 + 66539 0.66 0.885982
Target:  5'- cGCC-UGCGCuUCaacCGCGcGGCGUGCGa -3'
miRNA:   3'- -CGGcAUGUGcAGa--GCGC-CCGCGCGCg -5'
16236 3' -59.8 NC_004065.1 + 138496 0.66 0.882082
Target:  5'- cGCCGUccgcagguagcgguaACGCG-UUCGaCGGGCuGUugGCGCu -3'
miRNA:   3'- -CGGCA---------------UGUGCaGAGC-GCCCG-CG--CGCG- -5'
16236 3' -59.8 NC_004065.1 + 33620 0.66 0.879443
Target:  5'- gGCCG-GCAUGgccaaggccaUCGCGuucGGgGCGCGCu -3'
miRNA:   3'- -CGGCaUGUGCag--------AGCGC---CCgCGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 131743 0.66 0.879443
Target:  5'- aGCCaugAUcCGgaUC-CGCGaGGCGCGCGCc -3'
miRNA:   3'- -CGGca-UGuGC--AGaGCGC-CCGCGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 66956 0.66 0.879443
Target:  5'- cGCCGUucguGCA-GUCcaaaaCGCGGGCGCucuCGUa -3'
miRNA:   3'- -CGGCA----UGUgCAGa----GCGCCCGCGc--GCG- -5'
16236 3' -59.8 NC_004065.1 + 120305 0.66 0.879443
Target:  5'- cCCGUcgGCACGaUCUCuaGGGCcucguCGUGCu -3'
miRNA:   3'- cGGCA--UGUGC-AGAGcgCCCGc----GCGCG- -5'
16236 3' -59.8 NC_004065.1 + 199538 0.66 0.879443
Target:  5'- aGCCGg--GCGcCUCcagcCGGGCGCGCc- -3'
miRNA:   3'- -CGGCaugUGCaGAGc---GCCCGCGCGcg -5'
16236 3' -59.8 NC_004065.1 + 133612 0.66 0.872711
Target:  5'- cGCCGUGC-CGccgCUCGCGaGCGCaaaacacaGCaGCa -3'
miRNA:   3'- -CGGCAUGuGCa--GAGCGCcCGCG--------CG-CG- -5'
16236 3' -59.8 NC_004065.1 + 83594 0.66 0.872711
Target:  5'- gGCUGaACACG-UUCGa-GGCGCGCaGCu -3'
miRNA:   3'- -CGGCaUGUGCaGAGCgcCCGCGCG-CG- -5'
16236 3' -59.8 NC_004065.1 + 220730 0.66 0.872711
Target:  5'- -gCG-ACACGgcgaUCGCGgucGGCGUGUGCg -3'
miRNA:   3'- cgGCaUGUGCag--AGCGC---CCGCGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 187930 0.66 0.872711
Target:  5'- -aCGU--ACGUCggCGCcGGCGaCGCGCa -3'
miRNA:   3'- cgGCAugUGCAGa-GCGcCCGC-GCGCG- -5'
16236 3' -59.8 NC_004065.1 + 197335 0.66 0.872711
Target:  5'- -gCGUucCGCGUCcCGaaGGCGCuGCGCg -3'
miRNA:   3'- cgGCAu-GUGCAGaGCgcCCGCG-CGCG- -5'
16236 3' -59.8 NC_004065.1 + 200846 0.66 0.871342
Target:  5'- cCCGguggaguucgGCGUCgaCGgGGGCGCGgGCg -3'
miRNA:   3'- cGGCaug-------UGCAGa-GCgCCCGCGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.