miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16236 3' -59.8 NC_004065.1 + 229717 1.14 0.001241
Target:  5'- cGCCGUACACGUCUCGCGGGCGCGCGCa -3'
miRNA:   3'- -CGGCAUGUGCAGAGCGCCCGCGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 92534 0.8 0.19293
Target:  5'- cGCgCGUACGgG-CggGCGGGCGCGCGCa -3'
miRNA:   3'- -CG-GCAUGUgCaGagCGCCCGCGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 68151 0.78 0.265476
Target:  5'- aGCUGgACGCGgugaUCGCGgcGGCGCGCGCg -3'
miRNA:   3'- -CGGCaUGUGCag--AGCGC--CCGCGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 145758 0.78 0.265476
Target:  5'- cGCCGauCGCGUCgcgcgccggUCGCGGGCGCuCGCa -3'
miRNA:   3'- -CGGCauGUGCAG---------AGCGCCCGCGcGCG- -5'
16236 3' -59.8 NC_004065.1 + 71301 0.77 0.30938
Target:  5'- gGCCGcGCugGUCgcaCGuCGGGCGCGCa- -3'
miRNA:   3'- -CGGCaUGugCAGa--GC-GCCCGCGCGcg -5'
16236 3' -59.8 NC_004065.1 + 157982 0.77 0.316086
Target:  5'- uGgCGUACACGUaCUC-CGGGUGCaGCGCc -3'
miRNA:   3'- -CgGCAUGUGCA-GAGcGCCCGCG-CGCG- -5'
16236 3' -59.8 NC_004065.1 + 68202 0.77 0.3229
Target:  5'- cGCUGUACAagacuuaccUGUCUCaGCGGGUGaGCGCg -3'
miRNA:   3'- -CGGCAUGU---------GCAGAG-CGCCCGCgCGCG- -5'
16236 3' -59.8 NC_004065.1 + 135662 0.76 0.351247
Target:  5'- gGCCGUaacGCGCGUCg-GgGGGCuCGCGCa -3'
miRNA:   3'- -CGGCA---UGUGCAGagCgCCCGcGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 86898 0.75 0.389098
Target:  5'- gGUCGcgGCGCcgGUCUCGCccucggcGGCGCGCGCg -3'
miRNA:   3'- -CGGCa-UGUG--CAGAGCGc------CCGCGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 121472 0.75 0.396982
Target:  5'- gGUCGgucgGCGCGUC-CGCGGGCGUGaaggugGCg -3'
miRNA:   3'- -CGGCa---UGUGCAGaGCGCCCGCGCg-----CG- -5'
16236 3' -59.8 NC_004065.1 + 21309 0.75 0.396982
Target:  5'- uCCGUGCACGaC-CGCcucGGCGUGCGCg -3'
miRNA:   3'- cGGCAUGUGCaGaGCGc--CCGCGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 67121 0.75 0.404968
Target:  5'- cGCCGUGCugGaca-GC-GGCGCGCGCc -3'
miRNA:   3'- -CGGCAUGugCagagCGcCCGCGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 74890 0.75 0.404968
Target:  5'- aGCCG-ACcuCGUaCUCGCGGGCGCGgaggaaggcgaCGCa -3'
miRNA:   3'- -CGGCaUGu-GCA-GAGCGCCCGCGC-----------GCG- -5'
16236 3' -59.8 NC_004065.1 + 84024 0.75 0.413055
Target:  5'- cGCCGUACugGUCUCGaucgagacGGCGUcCGCc -3'
miRNA:   3'- -CGGCAUGugCAGAGCgc------CCGCGcGCG- -5'
16236 3' -59.8 NC_004065.1 + 36170 0.74 0.421241
Target:  5'- cGCUGUGuCAgcCG-CUCGCGGGgGgGCGCg -3'
miRNA:   3'- -CGGCAU-GU--GCaGAGCGCCCgCgCGCG- -5'
16236 3' -59.8 NC_004065.1 + 125603 0.74 0.437902
Target:  5'- gGCCGUGCGCG----GCGGGUcgauGCGCGCc -3'
miRNA:   3'- -CGGCAUGUGCagagCGCCCG----CGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 88701 0.74 0.437902
Target:  5'- cGUCGUACAUGacguUCUCGC-GGCGCGaGCg -3'
miRNA:   3'- -CGGCAUGUGC----AGAGCGcCCGCGCgCG- -5'
16236 3' -59.8 NC_004065.1 + 164458 0.73 0.471441
Target:  5'- cGCgGUACAgGUaCUCGCGacccgccGGCGaCGCGCc -3'
miRNA:   3'- -CGgCAUGUgCA-GAGCGC-------CCGC-GCGCG- -5'
16236 3' -59.8 NC_004065.1 + 25003 0.73 0.481135
Target:  5'- -gUGUGgGCGUC-CGUGGGCGCG-GCa -3'
miRNA:   3'- cgGCAUgUGCAGaGCGCCCGCGCgCG- -5'
16236 3' -59.8 NC_004065.1 + 79622 0.73 0.490031
Target:  5'- cGCUGcgcGCGCGgacgCU-GCGGGCGUGCGUg -3'
miRNA:   3'- -CGGCa--UGUGCa---GAgCGCCCGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.