miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16236 3' -59.8 NC_004065.1 + 264 0.66 0.870655
Target:  5'- gGCUGUccgGCACGaCUacCGCGGGaguguacugggaacUGUGCGCg -3'
miRNA:   3'- -CGGCA---UGUGCaGA--GCGCCC--------------GCGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 138433 0.66 0.865791
Target:  5'- cGCCGUGCguccucgagGgGUCgggGCGGGCGaGCaGCa -3'
miRNA:   3'- -CGGCAUG---------UgCAGag-CGCCCGCgCG-CG- -5'
16236 3' -59.8 NC_004065.1 + 192282 0.66 0.865791
Target:  5'- -aCGUGC-CGUCUCuCGGuGCGauccagcuucaCGCGCg -3'
miRNA:   3'- cgGCAUGuGCAGAGcGCC-CGC-----------GCGCG- -5'
16236 3' -59.8 NC_004065.1 + 124967 0.66 0.865791
Target:  5'- cGCC-UGCACGaagggCggccagaggCGCGGGUcgugcaGCGCGCu -3'
miRNA:   3'- -CGGcAUGUGCa----Ga--------GCGCCCG------CGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 109354 0.66 0.865791
Target:  5'- -aUGUACuuCGUCUCGCGcgacacGCuGCGCGUg -3'
miRNA:   3'- cgGCAUGu-GCAGAGCGCc-----CG-CGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 195071 0.66 0.865791
Target:  5'- --aGUGCAgGUCggGCGaGCGCGCGg -3'
miRNA:   3'- cggCAUGUgCAGagCGCcCGCGCGCg -5'
16236 3' -59.8 NC_004065.1 + 137483 0.66 0.865791
Target:  5'- cGCgCGUGCGCGcgCcCGCccgcccguacGCGCGCGCg -3'
miRNA:   3'- -CG-GCAUGUGCa-GaGCGcc--------CGCGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 54454 0.66 0.865791
Target:  5'- cGCUGUucgcGCGCgGUCUgcCGCGaGCGCacGCGCa -3'
miRNA:   3'- -CGGCA----UGUG-CAGA--GCGCcCGCG--CGCG- -5'
16236 3' -59.8 NC_004065.1 + 63033 0.66 0.865791
Target:  5'- uGCUGUccACACGUaacCUgcUGgGGGCG-GCGCa -3'
miRNA:   3'- -CGGCA--UGUGCA---GA--GCgCCCGCgCGCG- -5'
16236 3' -59.8 NC_004065.1 + 91061 0.66 0.865791
Target:  5'- aGgCG-ACugGUCUCGCaGaCGCGCaGCg -3'
miRNA:   3'- -CgGCaUGugCAGAGCGcCcGCGCG-CG- -5'
16236 3' -59.8 NC_004065.1 + 148153 0.66 0.865089
Target:  5'- cGCCGUGCcCGagaaccaUCUCuucaccauCGGGCcGUGCGCc -3'
miRNA:   3'- -CGGCAUGuGC-------AGAGc-------GCCCG-CGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 129429 0.66 0.864385
Target:  5'- aGCUGUGCGCcUCggaccgguacgugcCGCGGGCGgaaaaaagccgcaaGCGCa -3'
miRNA:   3'- -CGGCAUGUGcAGa-------------GCGCCCGCg-------------CGCG- -5'
16236 3' -59.8 NC_004065.1 + 66751 0.66 0.858687
Target:  5'- uCCGUAC-CGgaaUCGCGaggaGGCGCcgGCGCc -3'
miRNA:   3'- cGGCAUGuGCag-AGCGC----CCGCG--CGCG- -5'
16236 3' -59.8 NC_004065.1 + 186882 0.66 0.858687
Target:  5'- uCCGUGCGCGUgUcuucCGCGGccggcggucuucGCGaGCGCg -3'
miRNA:   3'- cGGCAUGUGCAgA----GCGCC------------CGCgCGCG- -5'
16236 3' -59.8 NC_004065.1 + 82612 0.66 0.849186
Target:  5'- cGUCGUGCugcuggacgcgguuGCGUC-CGgGGGCGaaccucuGCGCc -3'
miRNA:   3'- -CGGCAUG--------------UGCAGaGCgCCCGCg------CGCG- -5'
16236 3' -59.8 NC_004065.1 + 147904 0.67 0.843948
Target:  5'- cGCCGgAUACGUCagC-CGGGCGCaGCu- -3'
miRNA:   3'- -CGGCaUGUGCAGa-GcGCCCGCG-CGcg -5'
16236 3' -59.8 NC_004065.1 + 121710 0.67 0.843948
Target:  5'- cGCCccGCACG-CUUGCGGGCGUcagGUa -3'
miRNA:   3'- -CGGcaUGUGCaGAGCGCCCGCGcg-CG- -5'
16236 3' -59.8 NC_004065.1 + 150391 0.67 0.843948
Target:  5'- cGCCGacacGCACGcCcgcaGCGuccGCGCGCGCa -3'
miRNA:   3'- -CGGCa---UGUGCaGag--CGCc--CGCGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 196630 0.67 0.843948
Target:  5'- cGCCGggGCgaGCGcCUCGagaGGcucCGCGCGCa -3'
miRNA:   3'- -CGGCa-UG--UGCaGAGCg--CCc--GCGCGCG- -5'
16236 3' -59.8 NC_004065.1 + 78207 0.67 0.836323
Target:  5'- cCCGUcGCGCGUCgagCGCGauuucuGGCuguaCGCGCa -3'
miRNA:   3'- cGGCA-UGUGCAGa--GCGC------CCGc---GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.