Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16236 | 3' | -59.8 | NC_004065.1 | + | 112993 | 0.7 | 0.639797 |
Target: 5'- cGCgGUGCAgCGUCUCGgucGGCacgugaGCGCGCa -3' miRNA: 3'- -CGgCAUGU-GCAGAGCgc-CCG------CGCGCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 25003 | 0.73 | 0.481135 |
Target: 5'- -gUGUGgGCGUC-CGUGGGCGCG-GCa -3' miRNA: 3'- cgGCAUgUGCAGaGCGCCCGCGCgCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 98246 | 0.73 | 0.508048 |
Target: 5'- uGCCG-ACgACGgCUCGggacggcggcccUGGGCGCGCGCc -3' miRNA: 3'- -CGGCaUG-UGCaGAGC------------GCCCGCGCGCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 33203 | 0.72 | 0.563611 |
Target: 5'- cGUCGUACAUGaggUCGCGGGCGagGUGUc -3' miRNA: 3'- -CGGCAUGUGCag-AGCGCCCGCg-CGCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 110305 | 0.72 | 0.563611 |
Target: 5'- gGCCGU-CACgGUCUCGCagcucuggccgGGGCuCGUGCu -3' miRNA: 3'- -CGGCAuGUG-CAGAGCG-----------CCCGcGCGCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 116713 | 0.71 | 0.582517 |
Target: 5'- uGUgGUGCGcCGUCUCGCuGGGuCGCGgGa -3' miRNA: 3'- -CGgCAUGU-GCAGAGCG-CCC-GCGCgCg -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 68791 | 0.71 | 0.620657 |
Target: 5'- gGCCGUGucggagaACGU---GCGGGCGCuGCGCg -3' miRNA: 3'- -CGGCAUg------UGCAgagCGCCCGCG-CGCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 128447 | 0.71 | 0.620657 |
Target: 5'- aGCgCGgcggAgGCGUC-CGCGGGCGCGaucagGCu -3' miRNA: 3'- -CG-GCa---UgUGCAGaGCGCCCGCGCg----CG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 38121 | 0.71 | 0.630227 |
Target: 5'- uGCCGU--ACGUCgCGCcggacuucGGCGUGCGCa -3' miRNA: 3'- -CGGCAugUGCAGaGCGc-------CCGCGCGCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 88701 | 0.74 | 0.437902 |
Target: 5'- cGUCGUACAUGacguUCUCGC-GGCGCGaGCg -3' miRNA: 3'- -CGGCAUGUGC----AGAGCGcCCGCGCgCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 125603 | 0.74 | 0.437902 |
Target: 5'- gGCCGUGCGCG----GCGGGUcgauGCGCGCc -3' miRNA: 3'- -CGGCAUGUGCagagCGCCCG----CGCGCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 74890 | 0.75 | 0.404968 |
Target: 5'- aGCCG-ACcuCGUaCUCGCGGGCGCGgaggaaggcgaCGCa -3' miRNA: 3'- -CGGCaUGu-GCA-GAGCGCCCGCGC-----------GCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 92534 | 0.8 | 0.19293 |
Target: 5'- cGCgCGUACGgG-CggGCGGGCGCGCGCa -3' miRNA: 3'- -CG-GCAUGUgCaGagCGCCCGCGCGCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 68151 | 0.78 | 0.265476 |
Target: 5'- aGCUGgACGCGgugaUCGCGgcGGCGCGCGCg -3' miRNA: 3'- -CGGCaUGUGCag--AGCGC--CCGCGCGCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 145758 | 0.78 | 0.265476 |
Target: 5'- cGCCGauCGCGUCgcgcgccggUCGCGGGCGCuCGCa -3' miRNA: 3'- -CGGCauGUGCAG---------AGCGCCCGCGcGCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 68202 | 0.77 | 0.3229 |
Target: 5'- cGCUGUACAagacuuaccUGUCUCaGCGGGUGaGCGCg -3' miRNA: 3'- -CGGCAUGU---------GCAGAG-CGCCCGCgCGCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 135662 | 0.76 | 0.351247 |
Target: 5'- gGCCGUaacGCGCGUCg-GgGGGCuCGCGCa -3' miRNA: 3'- -CGGCA---UGUGCAGagCgCCCGcGCGCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 21309 | 0.75 | 0.396982 |
Target: 5'- uCCGUGCACGaC-CGCcucGGCGUGCGCg -3' miRNA: 3'- cGGCAUGUGCaGaGCGc--CCGCGCGCG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 121472 | 0.75 | 0.396982 |
Target: 5'- gGUCGgucgGCGCGUC-CGCGGGCGUGaaggugGCg -3' miRNA: 3'- -CGGCa---UGUGCAGaGCGCCCGCGCg-----CG- -5' |
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16236 | 3' | -59.8 | NC_004065.1 | + | 67121 | 0.75 | 0.404968 |
Target: 5'- cGCCGUGCugGaca-GC-GGCGCGCGCc -3' miRNA: 3'- -CGGCAUGugCagagCGcCCGCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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