miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16236 5' -55.3 NC_004065.1 + 120480 0.66 0.977524
Target:  5'- aGGU-CGCUgaCGaCGGU-GUCGUGCCc -3'
miRNA:   3'- gUCAuGUGAggGC-GCCAuCAGCACGG- -5'
16236 5' -55.3 NC_004065.1 + 116931 0.66 0.977524
Target:  5'- uCAGUu--CUUCgGCGGUGGUCuGguggGCCu -3'
miRNA:   3'- -GUCAuguGAGGgCGCCAUCAG-Ca---CGG- -5'
16236 5' -55.3 NC_004065.1 + 201751 0.66 0.9698
Target:  5'- uCGGaGCACagCaCGCGGUAGUCGUcUCu -3'
miRNA:   3'- -GUCaUGUGagG-GCGCCAUCAGCAcGG- -5'
16236 5' -55.3 NC_004065.1 + 95861 0.66 0.9698
Target:  5'- aCGGaGCcgUCCUGCGuGUggaccaccacacAGUCGUGCCg -3'
miRNA:   3'- -GUCaUGugAGGGCGC-CA------------UCAGCACGG- -5'
16236 5' -55.3 NC_004065.1 + 195422 0.66 0.966847
Target:  5'- -cGUACGCUCCCGCcg----CGUcGCCg -3'
miRNA:   3'- guCAUGUGAGGGCGccaucaGCA-CGG- -5'
16236 5' -55.3 NC_004065.1 + 165452 0.67 0.960343
Target:  5'- cCAGUcgacGCGCUcCCCGCGGcGGcucagauacUCGUucGCCa -3'
miRNA:   3'- -GUCA----UGUGA-GGGCGCCaUC---------AGCA--CGG- -5'
16236 5' -55.3 NC_004065.1 + 66784 0.67 0.956413
Target:  5'- aCAGacgAUGCUCCCGCGGUGGaacauguUCaUGaCCu -3'
miRNA:   3'- -GUCa--UGUGAGGGCGCCAUC-------AGcAC-GG- -5'
16236 5' -55.3 NC_004065.1 + 99184 0.67 0.953007
Target:  5'- --cUGCAcCUCCuCGCGGUAGUgguuacgcgUGUGUCu -3'
miRNA:   3'- gucAUGU-GAGG-GCGCCAUCA---------GCACGG- -5'
16236 5' -55.3 NC_004065.1 + 125637 0.67 0.953007
Target:  5'- aAGUGCACgagCCGcCGcGUGGcgUGUGCCa -3'
miRNA:   3'- gUCAUGUGag-GGC-GC-CAUCa-GCACGG- -5'
16236 5' -55.3 NC_004065.1 + 181191 0.67 0.949017
Target:  5'- aAGUACGuCUgCUGCGGUgagaGGaUgGUGCCg -3'
miRNA:   3'- gUCAUGU-GAgGGCGCCA----UC-AgCACGG- -5'
16236 5' -55.3 NC_004065.1 + 194672 0.67 0.944809
Target:  5'- aGGUGaugUACUCCCGCacgaguguGUAcGUCGUGUCg -3'
miRNA:   3'- gUCAU---GUGAGGGCGc-------CAU-CAGCACGG- -5'
16236 5' -55.3 NC_004065.1 + 138849 0.67 0.940379
Target:  5'- ---gGCGCUUCCGCGGccGUCGccUGCg -3'
miRNA:   3'- gucaUGUGAGGGCGCCauCAGC--ACGg -5'
16236 5' -55.3 NC_004065.1 + 21302 0.68 0.935726
Target:  5'- ----cCGUUCCCGCGGUucuacucGUCGUGCUa -3'
miRNA:   3'- gucauGUGAGGGCGCCAu------CAGCACGG- -5'
16236 5' -55.3 NC_004065.1 + 78262 0.68 0.930849
Target:  5'- --cUGCACgUCCCgauucugcguGCGGUGGUCGUaGCg -3'
miRNA:   3'- gucAUGUG-AGGG----------CGCCAUCAGCA-CGg -5'
16236 5' -55.3 NC_004065.1 + 17510 0.68 0.925747
Target:  5'- -cGUGCgGCUCa-GCGGaGGUCGUGCg -3'
miRNA:   3'- guCAUG-UGAGggCGCCaUCAGCACGg -5'
16236 5' -55.3 NC_004065.1 + 27824 0.68 0.914866
Target:  5'- gGGUACcC-CCCGgGGUGGUgGcugGCCg -3'
miRNA:   3'- gUCAUGuGaGGGCgCCAUCAgCa--CGG- -5'
16236 5' -55.3 NC_004065.1 + 1103 0.68 0.914866
Target:  5'- uGGUACGCgucucgucCCCGUGGUGucuGUCG-GCUg -3'
miRNA:   3'- gUCAUGUGa-------GGGCGCCAU---CAGCaCGG- -5'
16236 5' -55.3 NC_004065.1 + 98859 0.69 0.90309
Target:  5'- gGGUGCGCUgCCGgaaCGGgGGUCGUcGUCg -3'
miRNA:   3'- gUCAUGUGAgGGC---GCCaUCAGCA-CGG- -5'
16236 5' -55.3 NC_004065.1 + 53844 0.69 0.896871
Target:  5'- -cGUGCcaACUCuUCGCGGcGGUCGcGCCg -3'
miRNA:   3'- guCAUG--UGAG-GGCGCCaUCAGCaCGG- -5'
16236 5' -55.3 NC_004065.1 + 68664 0.69 0.890434
Target:  5'- -cGUACGCgcagUCgGCGuacgAGUCGUGCCa -3'
miRNA:   3'- guCAUGUGa---GGgCGCca--UCAGCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.