miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1624 3' -63.7 NC_001347.2 + 148627 0.66 0.666646
Target:  5'- cGGGUGGCcGGCGUCAgcguuCGCAGcCCg-- -3'
miRNA:   3'- -UCCACCGcCCGCGGU-----GCGUCcGGaag -5'
1624 3' -63.7 NC_001347.2 + 39643 0.66 0.666646
Target:  5'- cGuGUGccGCGGGCGaCACGCAgcuGGCUUUUa -3'
miRNA:   3'- uC-CAC--CGCCCGCgGUGCGU---CCGGAAG- -5'
1624 3' -63.7 NC_001347.2 + 1753 0.66 0.666646
Target:  5'- cGGUGGCGcugcaGaCGCCGgGCAGGCg--- -3'
miRNA:   3'- uCCACCGCc----C-GCGGUgCGUCCGgaag -5'
1624 3' -63.7 NC_001347.2 + 128276 0.66 0.666646
Target:  5'- cGGUGGCGacGGCGCCACuGCc-GCUg-- -3'
miRNA:   3'- uCCACCGC--CCGCGGUG-CGucCGGaag -5'
1624 3' -63.7 NC_001347.2 + 28400 0.66 0.666646
Target:  5'- uGGUGuaCGGGCcuaGCCugGCucauGGCCUg- -3'
miRNA:   3'- uCCACc-GCCCG---CGGugCGu---CCGGAag -5'
1624 3' -63.7 NC_001347.2 + 5610 0.66 0.666646
Target:  5'- uGGUGGUaGGC-CCGCGagaAGGCCcgCa -3'
miRNA:   3'- uCCACCGcCCGcGGUGCg--UCCGGaaG- -5'
1624 3' -63.7 NC_001347.2 + 155307 0.66 0.657101
Target:  5'- uGGUGGaCGGG-GCCGgGCuGGUCg-- -3'
miRNA:   3'- uCCACC-GCCCgCGGUgCGuCCGGaag -5'
1624 3' -63.7 NC_001347.2 + 66853 0.66 0.657101
Target:  5'- cGGUGGCgacaacGGGUuuaCCACGUAGGgCUUg -3'
miRNA:   3'- uCCACCG------CCCGc--GGUGCGUCCgGAAg -5'
1624 3' -63.7 NC_001347.2 + 78386 0.66 0.647538
Target:  5'- -cGUGGUGGGagGaCC-CGCGGGCCacgUCg -3'
miRNA:   3'- ucCACCGCCCg-C-GGuGCGUCCGGa--AG- -5'
1624 3' -63.7 NC_001347.2 + 159509 0.66 0.647538
Target:  5'- uGGGUGGCGGGUuuUCACGCAGaaaCUg- -3'
miRNA:   3'- -UCCACCGCCCGc-GGUGCGUCcg-GAag -5'
1624 3' -63.7 NC_001347.2 + 85513 0.66 0.647538
Target:  5'- cGGcuUGaGCGGGCGCgCGCGCuugagcguGGCCc-- -3'
miRNA:   3'- uCC--AC-CGCCCGCG-GUGCGu-------CCGGaag -5'
1624 3' -63.7 NC_001347.2 + 39701 0.66 0.637007
Target:  5'- --cUGGCGccgccuuGGCGCCACGCAgucuggaaGGCCg-- -3'
miRNA:   3'- uccACCGC-------CCGCGGUGCGU--------CCGGaag -5'
1624 3' -63.7 NC_001347.2 + 85324 0.66 0.628387
Target:  5'- cAGGUGGUGaucaGCGCCGcCGCcAGcGCCgUCg -3'
miRNA:   3'- -UCCACCGCc---CGCGGU-GCG-UC-CGGaAG- -5'
1624 3' -63.7 NC_001347.2 + 151351 0.67 0.609246
Target:  5'- uGGUGGCgcguGGGCccaGCCugGCGcacuacgugacGGCCUg- -3'
miRNA:   3'- uCCACCG----CCCG---CGGugCGU-----------CCGGAag -5'
1624 3' -63.7 NC_001347.2 + 229541 0.67 0.609246
Target:  5'- cGGGUGGgugugugcCGGGUGUguCGCGGGCgUg- -3'
miRNA:   3'- -UCCACC--------GCCCGCGguGCGUCCGgAag -5'
1624 3' -63.7 NC_001347.2 + 62 0.67 0.609246
Target:  5'- cGGGUGGgugugugcCGGGUGUguCGCGGGCgUg- -3'
miRNA:   3'- -UCCACC--------GCCCGCGguGCGUCCGgAag -5'
1624 3' -63.7 NC_001347.2 + 95470 0.67 0.590165
Target:  5'- ---gGGCGcGCGUCACGCGGcGCCggugUCg -3'
miRNA:   3'- uccaCCGCcCGCGGUGCGUC-CGGa---AG- -5'
1624 3' -63.7 NC_001347.2 + 147864 0.67 0.580661
Target:  5'- ---cGGCcuGGGCGCCGCGggaaAGGCCg-- -3'
miRNA:   3'- uccaCCG--CCCGCGGUGCg---UCCGGaag -5'
1624 3' -63.7 NC_001347.2 + 38024 0.67 0.580661
Target:  5'- cGGcGGCGGGCGCCgacucGCGUcccAGcGCCa-- -3'
miRNA:   3'- uCCaCCGCCCGCGG-----UGCG---UC-CGGaag -5'
1624 3' -63.7 NC_001347.2 + 1941 0.67 0.580661
Target:  5'- cGGUGGCuGG-GCUGCGCggcgGGGCCggCg -3'
miRNA:   3'- uCCACCGcCCgCGGUGCG----UCCGGaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.