miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1624 3' -63.7 NC_001347.2 + 229541 0.67 0.609246
Target:  5'- cGGGUGGgugugugcCGGGUGUguCGCGGGCgUg- -3'
miRNA:   3'- -UCCACC--------GCCCGCGguGCGUCCGgAag -5'
1624 3' -63.7 NC_001347.2 + 151351 0.67 0.609246
Target:  5'- uGGUGGCgcguGGGCccaGCCugGCGcacuacgugacGGCCUg- -3'
miRNA:   3'- uCCACCG----CCCG---CGGugCGU-----------CCGGAag -5'
1624 3' -63.7 NC_001347.2 + 158024 0.68 0.506224
Target:  5'- uAGGacacGCGGGCGCCGgacaGCAGGCgCgUCa -3'
miRNA:   3'- -UCCac--CGCCCGCGGUg---CGUCCG-GaAG- -5'
1624 3' -63.7 NC_001347.2 + 77868 0.68 0.533734
Target:  5'- cAGGUGGCcgagcgccuGGGCGCCguGCGCGuaGCCa-- -3'
miRNA:   3'- -UCCACCG---------CCCGCGG--UGCGUc-CGGaag -5'
1624 3' -63.7 NC_001347.2 + 198380 0.68 0.51533
Target:  5'- ---aGGUGGGUGgCGCGCGGGUCg-- -3'
miRNA:   3'- uccaCCGCCCGCgGUGCGUCCGGaag -5'
1624 3' -63.7 NC_001347.2 + 125292 0.69 0.470531
Target:  5'- cGGUGGCGucaguGGCgcaaccgucgcaGCCGCGCcGGCCUc- -3'
miRNA:   3'- uCCACCGC-----CCG------------CGGUGCGuCCGGAag -5'
1624 3' -63.7 NC_001347.2 + 147904 0.69 0.479338
Target:  5'- gGGGccGUGGGUGgCGCGguGGCCUcCg -3'
miRNA:   3'- -UCCacCGCCCGCgGUGCguCCGGAaG- -5'
1624 3' -63.7 NC_001347.2 + 182208 0.7 0.436164
Target:  5'- cGGGUGGCGGGCu--GCGUc-GCCUUCg -3'
miRNA:   3'- -UCCACCGCCCGcggUGCGucCGGAAG- -5'
1624 3' -63.7 NC_001347.2 + 183451 0.7 0.411361
Target:  5'- uAGGUGGUGaGGCGCggauaGCGCGccucGGCCUc- -3'
miRNA:   3'- -UCCACCGC-CCGCGg----UGCGU----CCGGAag -5'
1624 3' -63.7 NC_001347.2 + 166050 0.7 0.436164
Target:  5'- cGGUGuCGGGCGUCAUGCGGaGUCg-- -3'
miRNA:   3'- uCCACcGCCCGCGGUGCGUC-CGGaag -5'
1624 3' -63.7 NC_001347.2 + 100875 0.72 0.32832
Target:  5'- gAGGcGGCGcGGCGCaGCGCcGGCCaUUCu -3'
miRNA:   3'- -UCCaCCGC-CCGCGgUGCGuCCGG-AAG- -5'
1624 3' -63.7 NC_001347.2 + 109479 0.76 0.18745
Target:  5'- cGGcgccaUGGCGGGCGCCuccacuucCGCGGGCCg-- -3'
miRNA:   3'- uCC-----ACCGCCCGCGGu-------GCGUCCGGaag -5'
1624 3' -63.7 NC_001347.2 + 140912 1.09 0.000832
Target:  5'- gAGGUGGCGGGCGCCACGCAGGCCUUCa -3'
miRNA:   3'- -UCCACCGCCCGCGGUGCGUCCGGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.