Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1624 | 3' | -63.7 | NC_001347.2 | + | 140912 | 1.09 | 0.000832 |
Target: 5'- gAGGUGGCGGGCGCCACGCAGGCCUUCa -3' miRNA: 3'- -UCCACCGCCCGCGGUGCGUCCGGAAG- -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 109479 | 0.76 | 0.18745 |
Target: 5'- cGGcgccaUGGCGGGCGCCuccacuucCGCGGGCCg-- -3' miRNA: 3'- uCC-----ACCGCCCGCGGu-------GCGUCCGGaag -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 100875 | 0.72 | 0.32832 |
Target: 5'- gAGGcGGCGcGGCGCaGCGCcGGCCaUUCu -3' miRNA: 3'- -UCCaCCGC-CCGCGgUGCGuCCGG-AAG- -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 183451 | 0.7 | 0.411361 |
Target: 5'- uAGGUGGUGaGGCGCggauaGCGCGccucGGCCUc- -3' miRNA: 3'- -UCCACCGC-CCGCGg----UGCGU----CCGGAag -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 166050 | 0.7 | 0.436164 |
Target: 5'- cGGUGuCGGGCGUCAUGCGGaGUCg-- -3' miRNA: 3'- uCCACcGCCCGCGGUGCGUC-CGGaag -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 182208 | 0.7 | 0.436164 |
Target: 5'- cGGGUGGCGGGCu--GCGUc-GCCUUCg -3' miRNA: 3'- -UCCACCGCCCGcggUGCGucCGGAAG- -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 125292 | 0.69 | 0.470531 |
Target: 5'- cGGUGGCGucaguGGCgcaaccgucgcaGCCGCGCcGGCCUc- -3' miRNA: 3'- uCCACCGC-----CCG------------CGGUGCGuCCGGAag -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 147904 | 0.69 | 0.479338 |
Target: 5'- gGGGccGUGGGUGgCGCGguGGCCUcCg -3' miRNA: 3'- -UCCacCGCCCGCgGUGCguCCGGAaG- -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 198380 | 0.68 | 0.51533 |
Target: 5'- ---aGGUGGGUGgCGCGCGGGUCg-- -3' miRNA: 3'- uccaCCGCCCGCgGUGCGUCCGGaag -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 77868 | 0.68 | 0.533734 |
Target: 5'- cAGGUGGCcgagcgccuGGGCGCCguGCGCGuaGCCa-- -3' miRNA: 3'- -UCCACCG---------CCCGCGG--UGCGUc-CGGaag -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 158024 | 0.68 | 0.506224 |
Target: 5'- uAGGacacGCGGGCGCCGgacaGCAGGCgCgUCa -3' miRNA: 3'- -UCCac--CGCCCGCGGUg---CGUCCG-GaAG- -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 1941 | 0.67 | 0.580661 |
Target: 5'- cGGUGGCuGG-GCUGCGCggcgGGGCCggCg -3' miRNA: 3'- uCCACCGcCCgCGGUGCG----UCCGGaaG- -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 38024 | 0.67 | 0.580661 |
Target: 5'- cGGcGGCGGGCGCCgacucGCGUcccAGcGCCa-- -3' miRNA: 3'- uCCaCCGCCCGCGG-----UGCG---UC-CGGaag -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 147864 | 0.67 | 0.580661 |
Target: 5'- ---cGGCcuGGGCGCCGCGggaaAGGCCg-- -3' miRNA: 3'- uccaCCG--CCCGCGGUGCg---UCCGGaag -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 62 | 0.67 | 0.609246 |
Target: 5'- cGGGUGGgugugugcCGGGUGUguCGCGGGCgUg- -3' miRNA: 3'- -UCCACC--------GCCCGCGguGCGUCCGgAag -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 95470 | 0.67 | 0.590165 |
Target: 5'- ---gGGCGcGCGUCACGCGGcGCCggugUCg -3' miRNA: 3'- uccaCCGCcCGCGGUGCGUC-CGGa---AG- -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 229541 | 0.67 | 0.609246 |
Target: 5'- cGGGUGGgugugugcCGGGUGUguCGCGGGCgUg- -3' miRNA: 3'- -UCCACC--------GCCCGCGguGCGUCCGgAag -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 151351 | 0.67 | 0.609246 |
Target: 5'- uGGUGGCgcguGGGCccaGCCugGCGcacuacgugacGGCCUg- -3' miRNA: 3'- uCCACCG----CCCG---CGGugCGU-----------CCGGAag -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 136213 | 0.67 | 0.552367 |
Target: 5'- gGGGcGGCGGGCacGCCGgGUuuuauAGGUUUUCa -3' miRNA: 3'- -UCCaCCGCCCG--CGGUgCG-----UCCGGAAG- -5' |
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1624 | 3' | -63.7 | NC_001347.2 | + | 172137 | 0.67 | 0.561757 |
Target: 5'- gAGGUGGCgcaucugugGGGCGUgACGCcgucaguguGGgCUUCg -3' miRNA: 3'- -UCCACCG---------CCCGCGgUGCGu--------CCgGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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