miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1624 5' -55.7 NC_001347.2 + 52504 0.66 0.964422
Target:  5'- uCUGuuuGUCUgUGCGCCGUGGUgCUgggUCAg -3'
miRNA:   3'- -GACu--UAGGgAUGCGGCACCG-GAa--GGU- -5'
1624 5' -55.7 NC_001347.2 + 28722 0.66 0.964422
Target:  5'- uCUGGuAUCCaaaCUACGCCGgGGCCcuaggCCGc -3'
miRNA:   3'- -GACU-UAGG---GAUGCGGCaCCGGaa---GGU- -5'
1624 5' -55.7 NC_001347.2 + 164660 0.66 0.961088
Target:  5'- gUGAGgaaagCUCgucgaaggacgGCGCCGUGGCCguugCCGc -3'
miRNA:   3'- gACUUa----GGGa----------UGCGGCACCGGaa--GGU- -5'
1624 5' -55.7 NC_001347.2 + 175641 0.66 0.957543
Target:  5'- -gGGAUCauuuCUugGCCGUGGUgUUCa- -3'
miRNA:   3'- gaCUUAGg---GAugCGGCACCGgAAGgu -5'
1624 5' -55.7 NC_001347.2 + 177741 0.66 0.953783
Target:  5'- gUGAAcCCCaucgACGCCGagGGCCUcUCAg -3'
miRNA:   3'- gACUUaGGGa---UGCGGCa-CCGGAaGGU- -5'
1624 5' -55.7 NC_001347.2 + 120286 0.67 0.931654
Target:  5'- gCUGcuauAUCCCacaGCCGUGGaCCUggCCAa -3'
miRNA:   3'- -GACu---UAGGGaugCGGCACC-GGAa-GGU- -5'
1624 5' -55.7 NC_001347.2 + 166227 0.68 0.915648
Target:  5'- -aGAG-CUgUGCGCCGcGGCgUUCCAa -3'
miRNA:   3'- gaCUUaGGgAUGCGGCaCCGgAAGGU- -5'
1624 5' -55.7 NC_001347.2 + 203328 0.68 0.909856
Target:  5'- -----cCCUUGCGCCGcuUGGCUUUCUAc -3'
miRNA:   3'- gacuuaGGGAUGCGGC--ACCGGAAGGU- -5'
1624 5' -55.7 NC_001347.2 + 209993 0.68 0.891134
Target:  5'- -gGAGUCCCgcacCGCCG-GGUCgcggUCCGc -3'
miRNA:   3'- gaCUUAGGGau--GCGGCaCCGGa---AGGU- -5'
1624 5' -55.7 NC_001347.2 + 143660 0.7 0.815321
Target:  5'- -gGGAUCCUgGCGCCGgaGGCCggCCu -3'
miRNA:   3'- gaCUUAGGGaUGCGGCa-CCGGaaGGu -5'
1624 5' -55.7 NC_001347.2 + 121140 0.71 0.771034
Target:  5'- cCUGGAUCCCUACaacgaaGUgGUGGUCUcaucUCCGc -3'
miRNA:   3'- -GACUUAGGGAUG------CGgCACCGGA----AGGU- -5'
1624 5' -55.7 NC_001347.2 + 127178 0.75 0.534637
Target:  5'- aUGAccagcacGUCuUCUGCGCCGUGGCCU-CCGa -3'
miRNA:   3'- gACU-------UAG-GGAUGCGGCACCGGAaGGU- -5'
1624 5' -55.7 NC_001347.2 + 140947 1.08 0.004972
Target:  5'- uCUGAAUCCCUACGCCGUGGCCUUCCAg -3'
miRNA:   3'- -GACUUAGGGAUGCGGCACCGGAAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.