miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16249 3' -59.4 NC_004084.1 + 57140 0.66 0.525862
Target:  5'- cGAGCCGGGCA---UCCccGGGCGaUCa- -3'
miRNA:   3'- -CUUGGCCCGUugcAGGa-CCCGC-AGga -5'
16249 3' -59.4 NC_004084.1 + 36247 0.66 0.495406
Target:  5'- -uACCGGGuCGACGUCCUcGaGuGCG-CCg -3'
miRNA:   3'- cuUGGCCC-GUUGCAGGA-C-C-CGCaGGa -5'
16249 3' -59.4 NC_004084.1 + 51946 0.66 0.482458
Target:  5'- cAGCCGGGCGAgGUCCaggacaucccgcUccacggcgaccaguGGGCGUUCg -3'
miRNA:   3'- cUUGGCCCGUUgCAGG------------A--------------CCCGCAGGa -5'
16249 3' -59.4 NC_004084.1 + 49140 0.67 0.475553
Target:  5'- cGGACCaGGCGACGUUCgauGCGUUCa -3'
miRNA:   3'- -CUUGGcCCGUUGCAGGaccCGCAGGa -5'
16249 3' -59.4 NC_004084.1 + 10680 0.67 0.475553
Target:  5'- -cGCCGGGCAGCGaCCguucGGGUagCCg -3'
miRNA:   3'- cuUGGCCCGUUGCaGGa---CCCGcaGGa -5'
16249 3' -59.4 NC_004084.1 + 29398 0.68 0.374339
Target:  5'- --gUCGGGCGGCcacUCCUGGGgCGUCg- -3'
miRNA:   3'- cuuGGCCCGUUGc--AGGACCC-GCAGga -5'
16249 3' -59.4 NC_004084.1 + 34701 0.69 0.341325
Target:  5'- -cGCUGGGguGuCGUCCUuuccGGGCGUCg- -3'
miRNA:   3'- cuUGGCCCguU-GCAGGA----CCCGCAGga -5'
16249 3' -59.4 NC_004084.1 + 15227 0.71 0.268242
Target:  5'- -cACCGGGCAuCGUCCaccuccucGGGCGacUCCg -3'
miRNA:   3'- cuUGGCCCGUuGCAGGa-------CCCGC--AGGa -5'
16249 3' -59.4 NC_004084.1 + 56834 0.73 0.19782
Target:  5'- cAGCCGGGCGAcguCGUCCUGGaccCGUUCg -3'
miRNA:   3'- cUUGGCCCGUU---GCAGGACCc--GCAGGa -5'
16249 3' -59.4 NC_004084.1 + 5361 0.77 0.092878
Target:  5'- aGGACUGGGacgaucuCGACGUcgaaCCUGGGCGUCCa -3'
miRNA:   3'- -CUUGGCCC-------GUUGCA----GGACCCGCAGGa -5'
16249 3' -59.4 NC_004084.1 + 53274 0.84 0.032837
Target:  5'- cGGGCCGGGCGACGUCCU-GGCGaCCa -3'
miRNA:   3'- -CUUGGCCCGUUGCAGGAcCCGCaGGa -5'
16249 3' -59.4 NC_004084.1 + 57957 1.07 0.000625
Target:  5'- cGAACCGGGCAACGUCCUGGGCGUCCUc -3'
miRNA:   3'- -CUUGGCCCGUUGCAGGACCCGCAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.