miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16249 5' -55.5 NC_004084.1 + 456 0.66 0.722319
Target:  5'- gGAGGaCGCCcaGGACGUUgcccgguucgucgcCUCGAUCc -3'
miRNA:   3'- gCUCCaGCGGcaUCUGCGA--------------GAGCUAG- -5'
16249 5' -55.5 NC_004084.1 + 1009 0.69 0.542742
Target:  5'- uCGAGcUCGCCGgcGACG-UCgacgCGAUCg -3'
miRNA:   3'- -GCUCcAGCGGCauCUGCgAGa---GCUAG- -5'
16249 5' -55.5 NC_004084.1 + 5574 0.66 0.756446
Target:  5'- uCGAGGUCGCCagcgccgaACGCcgagagcaucUCUUGGUCa -3'
miRNA:   3'- -GCUCCAGCGGcauc----UGCG----------AGAGCUAG- -5'
16249 5' -55.5 NC_004084.1 + 6781 0.74 0.319706
Target:  5'- cCGAGGUC-UCGgcggGGACGUUCUCGAa- -3'
miRNA:   3'- -GCUCCAGcGGCa---UCUGCGAGAGCUag -5'
16249 5' -55.5 NC_004084.1 + 9154 0.66 0.714944
Target:  5'- uCGccGUCGCCGU-GACGUggacgUCGAUCu -3'
miRNA:   3'- -GCucCAGCGGCAuCUGCGag---AGCUAG- -5'
16249 5' -55.5 NC_004084.1 + 9844 0.66 0.714944
Target:  5'- aCGAGGUCGgCGaGGGCgGCUCacgCGGg- -3'
miRNA:   3'- -GCUCCAGCgGCaUCUG-CGAGa--GCUag -5'
16249 5' -55.5 NC_004084.1 + 11727 0.72 0.413197
Target:  5'- aGAcGUCGCCGgcGACGUgCUCGaAUCg -3'
miRNA:   3'- gCUcCAGCGGCauCUGCGaGAGC-UAG- -5'
16249 5' -55.5 NC_004084.1 + 13764 0.69 0.55334
Target:  5'- uCGAGGUCGCgcUGGGCggGCUCggaGAUCg -3'
miRNA:   3'- -GCUCCAGCGgcAUCUG--CGAGag-CUAG- -5'
16249 5' -55.5 NC_004084.1 + 16528 0.67 0.682943
Target:  5'- cCGcGGUCGUCGUGGAC-CUcCUCGcaguUCg -3'
miRNA:   3'- -GCuCCAGCGGCAUCUGcGA-GAGCu---AG- -5'
16249 5' -55.5 NC_004084.1 + 16625 0.72 0.413197
Target:  5'- uCGAGGUCGaUCGU-GACGCcCUCGucGUCg -3'
miRNA:   3'- -GCUCCAGC-GGCAuCUGCGaGAGC--UAG- -5'
16249 5' -55.5 NC_004084.1 + 18234 0.67 0.673247
Target:  5'- aCGAGGUCGCCGgaguuggccaucccgAuGACGUcuUCgaacCGGUCg -3'
miRNA:   3'- -GCUCCAGCGGCa--------------U-CUGCG--AGa---GCUAG- -5'
16249 5' -55.5 NC_004084.1 + 18712 0.69 0.563999
Target:  5'- gCGucGUCGCCGUcacuGGCGggUUCGGUCg -3'
miRNA:   3'- -GCucCAGCGGCAu---CUGCgaGAGCUAG- -5'
16249 5' -55.5 NC_004084.1 + 22436 0.67 0.672168
Target:  5'- aCGAGGccaauacCGCCGUcuucggGGGCGCUCgCGAc- -3'
miRNA:   3'- -GCUCCa------GCGGCA------UCUGCGAGaGCUag -5'
16249 5' -55.5 NC_004084.1 + 23846 0.66 0.75033
Target:  5'- gGAGGcagUCGCCGccagcgcccucgcgaUGGACGCgg-UGAUCg -3'
miRNA:   3'- gCUCC---AGCGGC---------------AUCUGCGagaGCUAG- -5'
16249 5' -55.5 NC_004084.1 + 26381 0.66 0.725467
Target:  5'- uCGGGaUCGUCGUAGAgGUcCUCGAa- -3'
miRNA:   3'- -GCUCcAGCGGCAUCUgCGaGAGCUag -5'
16249 5' -55.5 NC_004084.1 + 32208 0.67 0.682943
Target:  5'- aGAGGagCGCCucgAGAUGCUcCUCGAc- -3'
miRNA:   3'- gCUCCa-GCGGca-UCUGCGA-GAGCUag -5'
16249 5' -55.5 NC_004084.1 + 33596 0.72 0.413197
Target:  5'- -aAGGUCGuaGUgAGugGCgUCUCGAUCg -3'
miRNA:   3'- gcUCCAGCggCA-UCugCG-AGAGCUAG- -5'
16249 5' -55.5 NC_004084.1 + 35095 0.67 0.661355
Target:  5'- -cGGGUgacCGCUucugGUAcGCGCUCUCGGUCa -3'
miRNA:   3'- gcUCCA---GCGG----CAUcUGCGAGAGCUAG- -5'
16249 5' -55.5 NC_004084.1 + 35790 0.79 0.139075
Target:  5'- gGAGG-CGCCGggaaGGACGCgCUCGGUCa -3'
miRNA:   3'- gCUCCaGCGGCa---UCUGCGaGAGCUAG- -5'
16249 5' -55.5 NC_004084.1 + 36089 0.66 0.714944
Target:  5'- aCGAGGUCGCCGUcuccuacgAGugGCa--CGGc- -3'
miRNA:   3'- -GCUCCAGCGGCA--------UCugCGagaGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.