miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1625 3' -49.8 NC_001347.2 + 1687 0.66 0.999672
Target:  5'- cGUUGCUGCGCGccgaggaggcGACGGCg -3'
miRNA:   3'- aCAACGGUGUGCacaauagu--CUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 195652 0.66 0.999649
Target:  5'- cUGUugUGUCGCACGcccgaggAUCuGGCGGCc -3'
miRNA:   3'- -ACA--ACGGUGUGCacaa---UAGuCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 165669 0.66 0.999649
Target:  5'- ---aGCCGCGCGUc----CAGACGcGCg -3'
miRNA:   3'- acaaCGGUGUGCAcaauaGUCUGC-CG- -5'
1625 3' -49.8 NC_001347.2 + 172325 0.66 0.999562
Target:  5'- ---gGCgACGCaGUGUcUGUucCAGGCGGCa -3'
miRNA:   3'- acaaCGgUGUG-CACA-AUA--GUCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 150452 0.66 0.999457
Target:  5'- cUGUgcccgGCgACGCGgGUUcUguGGCGGCu -3'
miRNA:   3'- -ACAa----CGgUGUGCaCAAuAguCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 17334 0.66 0.999457
Target:  5'- gGUUGCCGCGCGUaugg-CcGcCGGCc -3'
miRNA:   3'- aCAACGGUGUGCAcaauaGuCuGCCG- -5'
1625 3' -49.8 NC_001347.2 + 164741 0.66 0.999331
Target:  5'- ---aGgCGCugGUGUUggCAGgcaACGGCg -3'
miRNA:   3'- acaaCgGUGugCACAAuaGUC---UGCCG- -5'
1625 3' -49.8 NC_001347.2 + 14576 0.66 0.999331
Target:  5'- uUGUUGCCcgagcCACGUcGcgAUCAccauGAUGGCa -3'
miRNA:   3'- -ACAACGGu----GUGCA-CaaUAGU----CUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 2292 0.66 0.999179
Target:  5'- gGUacUGCCcgcuggacggGCACGUGUacccgCuGGCGGCg -3'
miRNA:   3'- aCA--ACGG----------UGUGCACAaua--GuCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 16583 0.66 0.999179
Target:  5'- cGUUGCCGCugGUaccugcuggGUg--CcGugGGCu -3'
miRNA:   3'- aCAACGGUGugCA---------CAauaGuCugCCG- -5'
1625 3' -49.8 NC_001347.2 + 37294 0.66 0.999179
Target:  5'- -uUUGCauaaGCGCGgagGuUUGUCuGGCGGCu -3'
miRNA:   3'- acAACGg---UGUGCa--C-AAUAGuCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 223617 0.66 0.999179
Target:  5'- --cUGCCAUAUGUGUUGUCAaACu-- -3'
miRNA:   3'- acaACGGUGUGCACAAUAGUcUGccg -5'
1625 3' -49.8 NC_001347.2 + 229094 0.67 0.999
Target:  5'- --gUGCgGCAUGUGUguguugUAGugGGUg -3'
miRNA:   3'- acaACGgUGUGCACAaua---GUCugCCG- -5'
1625 3' -49.8 NC_001347.2 + 100669 0.67 0.998788
Target:  5'- ---gGuCCuCACGUG-UAUCGGACaGGCa -3'
miRNA:   3'- acaaC-GGuGUGCACaAUAGUCUG-CCG- -5'
1625 3' -49.8 NC_001347.2 + 68193 0.67 0.998538
Target:  5'- cGcUGCCACccaGCGaGgacacgCAGACGGCg -3'
miRNA:   3'- aCaACGGUG---UGCaCaaua--GUCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 77121 0.67 0.998247
Target:  5'- cGUUGCCGCGgCGguaGUUGcggCAGAgGGg -3'
miRNA:   3'- aCAACGGUGU-GCa--CAAUa--GUCUgCCg -5'
1625 3' -49.8 NC_001347.2 + 88892 0.67 0.998247
Target:  5'- -aUUGCUAUACc---UGUUAGACGGCg -3'
miRNA:   3'- acAACGGUGUGcacaAUAGUCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 21631 0.67 0.998247
Target:  5'- cGUcGCCGCAgGccuUUGUCGGcGCGGCu -3'
miRNA:   3'- aCAaCGGUGUgCac-AAUAGUC-UGCCG- -5'
1625 3' -49.8 NC_001347.2 + 191503 0.67 0.998247
Target:  5'- uUGUaGCCGCagcccuGCGUGUUGUUguaaauGACGGg -3'
miRNA:   3'- -ACAaCGGUG------UGCACAAUAGu-----CUGCCg -5'
1625 3' -49.8 NC_001347.2 + 148709 0.67 0.997908
Target:  5'- --gUGCCGCGagGUGUcauguucgacgGUCAGACGGg -3'
miRNA:   3'- acaACGGUGUg-CACAa----------UAGUCUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.