miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1625 3' -49.8 NC_001347.2 + 140369 1.12 0.011269
Target:  5'- uUGUUGCCACACGUGUUAUCAGACGGCc -3'
miRNA:   3'- -ACAACGGUGUGCACAAUAGUCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 157620 0.76 0.839755
Target:  5'- aGcgGCUGCACGcGUUGUUGGACGGUg -3'
miRNA:   3'- aCaaCGGUGUGCaCAAUAGUCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 32318 0.76 0.855934
Target:  5'- cGUcGCCACACGUGUgga-AGACauGGCg -3'
miRNA:   3'- aCAaCGGUGUGCACAauagUCUG--CCG- -5'
1625 3' -49.8 NC_001347.2 + 139658 0.72 0.966922
Target:  5'- cGgaGCCGCGUGUGcugAUCgAGGCGGCg -3'
miRNA:   3'- aCaaCGGUGUGCACaa-UAG-UCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 185123 0.7 0.986724
Target:  5'- cUGUUGCgGCGCGagcagccgcCGGGCGGCa -3'
miRNA:   3'- -ACAACGgUGUGCacaaua---GUCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 198908 0.7 0.98767
Target:  5'- ---cGCCGCGCGagGUg--UAGugGGCg -3'
miRNA:   3'- acaaCGGUGUGCa-CAauaGUCugCCG- -5'
1625 3' -49.8 NC_001347.2 + 36348 0.68 0.995284
Target:  5'- aGUUGagcggggUAUGCGUGUUcaGUUGGGCGGCa -3'
miRNA:   3'- aCAACg------GUGUGCACAA--UAGUCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 217309 0.68 0.995955
Target:  5'- --gUGUCACGCGUGUUcUCAuGCaGCa -3'
miRNA:   3'- acaACGGUGUGCACAAuAGUcUGcCG- -5'
1625 3' -49.8 NC_001347.2 + 3455 0.68 0.996546
Target:  5'- cGUUGUacgcauuaCACAgGUGUUGUUAGACuaGCa -3'
miRNA:   3'- aCAACG--------GUGUgCACAAUAGUCUGc-CG- -5'
1625 3' -49.8 NC_001347.2 + 163954 0.68 0.997064
Target:  5'- --gUGCaCGCGCGUcagcagcugcGUgcUCAGACGGUc -3'
miRNA:   3'- acaACG-GUGUGCA----------CAauAGUCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 189454 0.68 0.997342
Target:  5'- ---cGCCGCACGcGUccgcccgagcgCAGACGGUg -3'
miRNA:   3'- acaaCGGUGUGCaCAaua--------GUCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 28238 0.68 0.99743
Target:  5'- cGUUGCCACGCGUacuggcuGGAacguCGGCg -3'
miRNA:   3'- aCAACGGUGUGCAcaauag-UCU----GCCG- -5'
1625 3' -49.8 NC_001347.2 + 228234 0.68 0.997679
Target:  5'- ---cGCCAUgugcgggucguuucgGCGUGaaGUUGGACGGCg -3'
miRNA:   3'- acaaCGGUG---------------UGCACaaUAGUCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 158602 0.67 0.997908
Target:  5'- --cUGCUguGCGCGcGcUGUCAGACGGg -3'
miRNA:   3'- acaACGG--UGUGCaCaAUAGUCUGCCg -5'
1625 3' -49.8 NC_001347.2 + 148709 0.67 0.997908
Target:  5'- --gUGCCGCGagGUGUcauguucgacgGUCAGACGGg -3'
miRNA:   3'- acaACGGUGUg-CACAa----------UAGUCUGCCg -5'
1625 3' -49.8 NC_001347.2 + 191503 0.67 0.998247
Target:  5'- uUGUaGCCGCagcccuGCGUGUUGUUguaaauGACGGg -3'
miRNA:   3'- -ACAaCGGUG------UGCACAAUAGu-----CUGCCg -5'
1625 3' -49.8 NC_001347.2 + 88892 0.67 0.998247
Target:  5'- -aUUGCUAUACc---UGUUAGACGGCg -3'
miRNA:   3'- acAACGGUGUGcacaAUAGUCUGCCG- -5'
1625 3' -49.8 NC_001347.2 + 77121 0.67 0.998247
Target:  5'- cGUUGCCGCGgCGguaGUUGcggCAGAgGGg -3'
miRNA:   3'- aCAACGGUGU-GCa--CAAUa--GUCUgCCg -5'
1625 3' -49.8 NC_001347.2 + 21631 0.67 0.998247
Target:  5'- cGUcGCCGCAgGccuUUGUCGGcGCGGCu -3'
miRNA:   3'- aCAaCGGUGUgCac-AAUAGUC-UGCCG- -5'
1625 3' -49.8 NC_001347.2 + 68193 0.67 0.998538
Target:  5'- cGcUGCCACccaGCGaGgacacgCAGACGGCg -3'
miRNA:   3'- aCaACGGUG---UGCaCaaua--GUCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.