miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1625 5' -61 NC_001347.2 + 13125 0.66 0.803735
Target:  5'- -cGCGaacaaacaGCCCGCUacggGCCCGUGcG-GCg -3'
miRNA:   3'- caCGCg-------UGGGCGAa---CGGGCAC-CaCGg -5'
1625 5' -61 NC_001347.2 + 158682 0.66 0.803735
Target:  5'- -cGCGCGCugguuaaacagaCCGCcUGCCaCGUcGGcgGCCa -3'
miRNA:   3'- caCGCGUG------------GGCGaACGG-GCA-CCa-CGG- -5'
1625 5' -61 NC_001347.2 + 180422 0.66 0.777906
Target:  5'- aUGCgGCACCCGgcUGCaCGUGGccugGCCc -3'
miRNA:   3'- cACG-CGUGGGCgaACGgGCACCa---CGG- -5'
1625 5' -61 NC_001347.2 + 193603 0.66 0.769053
Target:  5'- cUGCGCGCgUUGCaaccuaacgUGCCCuUGGUGCa -3'
miRNA:   3'- cACGCGUG-GGCGa--------ACGGGcACCACGg -5'
1625 5' -61 NC_001347.2 + 63583 0.66 0.769053
Target:  5'- --cUGCAUCCGU---CCgGUGGUGCCg -3'
miRNA:   3'- cacGCGUGGGCGaacGGgCACCACGG- -5'
1625 5' -61 NC_001347.2 + 138295 0.66 0.769053
Target:  5'- uUGCGagaccagauuCAUCgCGCUUGUaccaCCGUGGUGCg -3'
miRNA:   3'- cACGC----------GUGG-GCGAACG----GGCACCACGg -5'
1625 5' -61 NC_001347.2 + 168723 0.66 0.760091
Target:  5'- --aCGCcUCCGCuUUGUCCGUGGcccgUGCCc -3'
miRNA:   3'- cacGCGuGGGCG-AACGGGCACC----ACGG- -5'
1625 5' -61 NC_001347.2 + 31814 0.66 0.760091
Target:  5'- -cGUGCACCaaauGCaaaCCCauGUGGUGCCa -3'
miRNA:   3'- caCGCGUGGg---CGaacGGG--CACCACGG- -5'
1625 5' -61 NC_001347.2 + 37967 0.67 0.751027
Target:  5'- -aGCGCGgCCGCUcccacUGCUCGcGGU-CCa -3'
miRNA:   3'- caCGCGUgGGCGA-----ACGGGCaCCAcGG- -5'
1625 5' -61 NC_001347.2 + 132285 0.67 0.751027
Target:  5'- --uCGCGCCCGCUUcCCCGgacGGUuucggcuuaGCCu -3'
miRNA:   3'- cacGCGUGGGCGAAcGGGCa--CCA---------CGG- -5'
1625 5' -61 NC_001347.2 + 76065 0.67 0.751027
Target:  5'- gGUG-GCGCUCGCUcaggcggaucUGCUCGUGcaGCCg -3'
miRNA:   3'- -CACgCGUGGGCGA----------ACGGGCACcaCGG- -5'
1625 5' -61 NC_001347.2 + 92237 0.67 0.731697
Target:  5'- -aGCuGCaACCCGCcUGCCCGcaggccgUGGccGCCg -3'
miRNA:   3'- caCG-CG-UGGGCGaACGGGC-------ACCa-CGG- -5'
1625 5' -61 NC_001347.2 + 113179 0.67 0.723305
Target:  5'- -cGCGCGCCCcaGCc-GCCggCGUGGcgGCCu -3'
miRNA:   3'- caCGCGUGGG--CGaaCGG--GCACCa-CGG- -5'
1625 5' -61 NC_001347.2 + 210170 0.67 0.723305
Target:  5'- cUGCGUucucACUCGCgucgUGCCUGacGGUGCUu -3'
miRNA:   3'- cACGCG----UGGGCGa---ACGGGCa-CCACGG- -5'
1625 5' -61 NC_001347.2 + 24609 0.67 0.713913
Target:  5'- -cGCGCugCCGUc-GUCCGUuccgacagcuGGUGCUa -3'
miRNA:   3'- caCGCGugGGCGaaCGGGCA----------CCACGG- -5'
1625 5' -61 NC_001347.2 + 608 0.67 0.704459
Target:  5'- gGUGCGCGCCCgggaggcgGCUgugcGCuCCaGUGGUacgcGCCu -3'
miRNA:   3'- -CACGCGUGGG--------CGAa---CG-GG-CACCA----CGG- -5'
1625 5' -61 NC_001347.2 + 194936 0.68 0.69876
Target:  5'- -gGCuCGCCCGCUUguacuuucacuuucgGCUCGUGGaacgugGCCg -3'
miRNA:   3'- caCGcGUGGGCGAA---------------CGGGCACCa-----CGG- -5'
1625 5' -61 NC_001347.2 + 195639 0.68 0.694951
Target:  5'- uGUGCGCGCCggccuguuguguCGCacGCCCGaggaucUGGcgGCCg -3'
miRNA:   3'- -CACGCGUGG------------GCGaaCGGGC------ACCa-CGG- -5'
1625 5' -61 NC_001347.2 + 84596 0.68 0.685395
Target:  5'- -aGCGCACCgCGUUUuucuuggaGCCguCGUGGgugGCCu -3'
miRNA:   3'- caCGCGUGG-GCGAA--------CGG--GCACCa--CGG- -5'
1625 5' -61 NC_001347.2 + 164481 0.68 0.685395
Target:  5'- -cGUGCAUgCGCUgcagauccaGgCCGUGGUGCa -3'
miRNA:   3'- caCGCGUGgGCGAa--------CgGGCACCACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.