miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1625 5' -61 NC_001347.2 + 140405 1.09 0.001405
Target:  5'- gGUGCGCACCCGCUUGCCCGUGGUGCCc -3'
miRNA:   3'- -CACGCGUGGGCGAACGGGCACCACGG- -5'
1625 5' -61 NC_001347.2 + 200313 0.77 0.227362
Target:  5'- cGUGCGCAUCaaCGCaggccaggugUUGCCCGUGGUcugGCCg -3'
miRNA:   3'- -CACGCGUGG--GCG----------AACGGGCACCA---CGG- -5'
1625 5' -61 NC_001347.2 + 199893 0.75 0.304547
Target:  5'- cUGCGCGCCCGCgUGCUCGUGaaaacGCUg -3'
miRNA:   3'- cACGCGUGGGCGaACGGGCACca---CGG- -5'
1625 5' -61 NC_001347.2 + 158181 0.75 0.304547
Target:  5'- -cGCGCGCUCGCUggUGgCCGUGGUcuGUCg -3'
miRNA:   3'- caCGCGUGGGCGA--ACgGGCACCA--CGG- -5'
1625 5' -61 NC_001347.2 + 127562 0.74 0.332033
Target:  5'- cGUGCcCACCCaacaGCgUGCCCGUGGacgcgGCCg -3'
miRNA:   3'- -CACGcGUGGG----CGaACGGGCACCa----CGG- -5'
1625 5' -61 NC_001347.2 + 16580 0.73 0.368891
Target:  5'- cUGCGUugCCGCUgguaCCUGcugGGUGCCg -3'
miRNA:   3'- cACGCGugGGCGAac--GGGCa--CCACGG- -5'
1625 5' -61 NC_001347.2 + 79845 0.73 0.392314
Target:  5'- -aGCGCAagaCCGUggacgguugGCCCGUGG-GCCu -3'
miRNA:   3'- caCGCGUg--GGCGaa-------CGGGCACCaCGG- -5'
1625 5' -61 NC_001347.2 + 172256 0.72 0.425009
Target:  5'- gGUGCGgaGgCCGCUgcgcgUGCCCGUGGUGa- -3'
miRNA:   3'- -CACGCg-UgGGCGA-----ACGGGCACCACgg -5'
1625 5' -61 NC_001347.2 + 174814 0.72 0.425009
Target:  5'- -cGCGCgACCUGCUgGCCuUGUGGcGCCu -3'
miRNA:   3'- caCGCG-UGGGCGAaCGG-GCACCaCGG- -5'
1625 5' -61 NC_001347.2 + 24511 0.71 0.476951
Target:  5'- cUGgGCGCCCGaggUGCUCcuccUGGUGCCu -3'
miRNA:   3'- cACgCGUGGGCga-ACGGGc---ACCACGG- -5'
1625 5' -61 NC_001347.2 + 13514 0.71 0.504076
Target:  5'- gGUGCuCACCCGCcgggcgGCCCG-GGccGCCg -3'
miRNA:   3'- -CACGcGUGGGCGaa----CGGGCaCCa-CGG- -5'
1625 5' -61 NC_001347.2 + 110464 0.71 0.504076
Target:  5'- uUGCGCugCCGCUggaccgcgUGCCCGUuagcGGacUGCa -3'
miRNA:   3'- cACGCGugGGCGA--------ACGGGCA----CC--ACGg -5'
1625 5' -61 NC_001347.2 + 77961 0.71 0.513266
Target:  5'- cUGCGCggcaagcacAUCCGCUUGUaCGUGGcgGCCg -3'
miRNA:   3'- cACGCG---------UGGGCGAACGgGCACCa-CGG- -5'
1625 5' -61 NC_001347.2 + 157017 0.7 0.522524
Target:  5'- -cGCGCGCuUUGCgacucuggGCCCGcUGGUGCUg -3'
miRNA:   3'- caCGCGUG-GGCGaa------CGGGC-ACCACGG- -5'
1625 5' -61 NC_001347.2 + 199716 0.7 0.531846
Target:  5'- -gGCGCGCCCGCUgcgaUCUGcGGUuGCCg -3'
miRNA:   3'- caCGCGUGGGCGAac--GGGCaCCA-CGG- -5'
1625 5' -61 NC_001347.2 + 136032 0.7 0.563957
Target:  5'- -gGcCGCGCCCGg-UGCCCGgcccacggccccggaUGGUGCUc -3'
miRNA:   3'- caC-GCGUGGGCgaACGGGC---------------ACCACGG- -5'
1625 5' -61 NC_001347.2 + 2244 0.7 0.56968
Target:  5'- -cGCGCGCCa---UGCUgGUGGUGCUg -3'
miRNA:   3'- caCGCGUGGgcgaACGGgCACCACGG- -5'
1625 5' -61 NC_001347.2 + 154109 0.7 0.56968
Target:  5'- -cGUGCuCUCGCUgaacccCCCGcUGGUGCCa -3'
miRNA:   3'- caCGCGuGGGCGAac----GGGC-ACCACGG- -5'
1625 5' -61 NC_001347.2 + 94353 0.69 0.607174
Target:  5'- gGUGCGUcguccucaucuccGCCUggaGCgcgGCCCGUGGaucgGCCa -3'
miRNA:   3'- -CACGCG-------------UGGG---CGaa-CGGGCACCa---CGG- -5'
1625 5' -61 NC_001347.2 + 206741 0.69 0.62749
Target:  5'- uUGCgGCGCCUGUgguaaaCCGUGGUGUCc -3'
miRNA:   3'- cACG-CGUGGGCGaacg--GGCACCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.