Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16250 | 3' | -56 | NC_004084.1 | + | 54212 | 0.67 | 0.681228 |
Target: 5'- aCCGUCAgcggCUCGAGUcggaUCUCGacGUCGGa -3' miRNA: 3'- -GGCAGUa---GAGCUCAa---GGAGC--CGGCCc -5' |
|||||||
16250 | 3' | -56 | NC_004084.1 | + | 7122 | 0.68 | 0.660047 |
Target: 5'- gCCGUCuuggugaugAUCUcCGuGUaggUgUUCGGCCGGGg -3' miRNA: 3'- -GGCAG---------UAGA-GCuCA---AgGAGCCGGCCC- -5' |
|||||||
16250 | 3' | -56 | NC_004084.1 | + | 28139 | 0.68 | 0.63877 |
Target: 5'- aCGUCcucGUCUCGAua-CUUCGGCUGGa -3' miRNA: 3'- gGCAG---UAGAGCUcaaGGAGCCGGCCc -5' |
|||||||
16250 | 3' | -56 | NC_004084.1 | + | 43184 | 0.68 | 0.617469 |
Target: 5'- gUGUCAUCUC-AGUUUCUCGGUuugUGGu -3' miRNA: 3'- gGCAGUAGAGcUCAAGGAGCCG---GCCc -5' |
|||||||
16250 | 3' | -56 | NC_004084.1 | + | 28340 | 0.68 | 0.606833 |
Target: 5'- gCCGUCcuucuUCUCGcggacgaguagcGGUUCCUCGGUCa-- -3' miRNA: 3'- -GGCAGu----AGAGC------------UCAAGGAGCCGGccc -5' |
|||||||
16250 | 3' | -56 | NC_004084.1 | + | 52025 | 0.69 | 0.596217 |
Target: 5'- -aGUCAUCUCGG--UCCUCGGCg--- -3' miRNA: 3'- ggCAGUAGAGCUcaAGGAGCCGgccc -5' |
|||||||
16250 | 3' | -56 | NC_004084.1 | + | 4246 | 0.69 | 0.554115 |
Target: 5'- gCGUCGUucCUCGAGUUCCgCGGCa--- -3' miRNA: 3'- gGCAGUA--GAGCUCAAGGaGCCGgccc -5' |
|||||||
16250 | 3' | -56 | NC_004084.1 | + | 5719 | 0.7 | 0.543717 |
Target: 5'- aCGUCG-CUCGGGccgaggUCCUCGaUCGGGa -3' miRNA: 3'- gGCAGUaGAGCUCa-----AGGAGCcGGCCC- -5' |
|||||||
16250 | 3' | -56 | NC_004084.1 | + | 1415 | 0.7 | 0.533383 |
Target: 5'- gCGUCGccauUCUCGGcGUcgccgUCCUCGGCCGc- -3' miRNA: 3'- gGCAGU----AGAGCU-CA-----AGGAGCCGGCcc -5' |
|||||||
16250 | 3' | -56 | NC_004084.1 | + | 16655 | 0.72 | 0.416381 |
Target: 5'- aCGUCGUC-CGGGaggUCCUCGucGCCGGc -3' miRNA: 3'- gGCAGUAGaGCUCa--AGGAGC--CGGCCc -5' |
|||||||
16250 | 3' | -56 | NC_004084.1 | + | 14202 | 0.73 | 0.36991 |
Target: 5'- gCCGUCGgccauccgcUCgUCGAGgUCCUCaaccgagacauacuGGCCGGGa -3' miRNA: 3'- -GGCAGU---------AG-AGCUCaAGGAG--------------CCGGCCC- -5' |
|||||||
16250 | 3' | -56 | NC_004084.1 | + | 57837 | 1.13 | 0.000731 |
Target: 5'- gCCGUCAUCUCGAGUUCCUCGGCCGGGa -3' miRNA: 3'- -GGCAGUAGAGCUCAAGGAGCCGGCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home