Results 81 - 100 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16251 | 3' | -61 | NC_004084.1 | + | 40247 | 0.66 | 0.482434 |
Target: 5'- cGCGAgugaCGUgCUCGAUCUccaucguccacuCGCCGgCGAc -3' miRNA: 3'- -CGCUa---GCGgGAGCUAGG------------GCGGCgGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 52963 | 0.66 | 0.482434 |
Target: 5'- cGUGAUCGUCg-CGAgugcgCUgGUCGCCGAu -3' miRNA: 3'- -CGCUAGCGGgaGCUa----GGgCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 55219 | 0.67 | 0.435398 |
Target: 5'- gGUGAgcuUCGCcaccgCCUCGuucacGUCCuCGCCGUCGAc -3' miRNA: 3'- -CGCU---AGCG-----GGAGC-----UAGG-GCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 50133 | 0.67 | 0.435398 |
Target: 5'- cGCGAUCGUCCggaugaCGAggUCGuuGUCGAg -3' miRNA: 3'- -CGCUAGCGGGa-----GCUagGGCggCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 35006 | 0.67 | 0.435398 |
Target: 5'- aGCGAUCaGCUgggCUCGAgUUUCGUCGUCGAu -3' miRNA: 3'- -CGCUAG-CGG---GAGCU-AGGGCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 54844 | 0.68 | 0.357884 |
Target: 5'- cGCGGUCGCCCgcucgcuuuccaUCGGaccgaCCUGCCaguucgagugucGCCGAa -3' miRNA: 3'- -CGCUAGCGGG------------AGCUa----GGGCGG------------CGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 7096 | 0.68 | 0.366006 |
Target: 5'- cGCGggCGCaCUCGAUCgCCucgGUCGCCGu -3' miRNA: 3'- -CGCuaGCGgGAGCUAG-GG---CGGCGGCu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 36081 | 0.68 | 0.374254 |
Target: 5'- aGUucUCGCCCUCGAguUCCuCGUCGUCu- -3' miRNA: 3'- -CGcuAGCGGGAGCU--AGG-GCGGCGGcu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 2249 | 0.68 | 0.382626 |
Target: 5'- -aGAUC-UCCUCGGUCuuGCCGuuGu -3' miRNA: 3'- cgCUAGcGGGAGCUAGggCGGCggCu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 19360 | 0.67 | 0.387709 |
Target: 5'- cCGAUCGCCCUCGuaguacucggcaugAugcugauUCCaCGCaUGCCGAg -3' miRNA: 3'- cGCUAGCGGGAGC--------------U-------AGG-GCG-GCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 718 | 0.67 | 0.391123 |
Target: 5'- uGCGuucaucgucUCGuCCCUCGAUauaCGCCGCCu- -3' miRNA: 3'- -CGCu--------AGC-GGGAGCUAgg-GCGGCGGcu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 7366 | 0.67 | 0.40848 |
Target: 5'- cGCGGuUCGCuCCgacggUGAUCCCGCCuGCg-- -3' miRNA: 3'- -CGCU-AGCG-GGa----GCUAGGGCGG-CGgcu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 11105 | 0.67 | 0.40848 |
Target: 5'- -aGAUCGCCguucgcggCUCGAaggaugUCCCagaGCCGCUGGa -3' miRNA: 3'- cgCUAGCGG--------GAGCU------AGGG---CGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 38393 | 0.67 | 0.40848 |
Target: 5'- cGCGAucgUCGUCCUCGAg--CGCCGaUCGGa -3' miRNA: 3'- -CGCU---AGCGGGAGCUaggGCGGC-GGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 22809 | 0.67 | 0.417338 |
Target: 5'- uCGAgagggCGUCacggaUCGAUCCguucgaGCCGCCGAg -3' miRNA: 3'- cGCUa----GCGGg----AGCUAGGg-----CGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 9056 | 0.67 | 0.423607 |
Target: 5'- cUGGUUGCCCUUcuggaacguucggaGAUCgCCGCgguaCGCCGAc -3' miRNA: 3'- cGCUAGCGGGAG--------------CUAG-GGCG----GCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 57533 | 0.67 | 0.426311 |
Target: 5'- -gGAUCGUCCUCcAUCuCCuCCGCCa- -3' miRNA: 3'- cgCUAGCGGGAGcUAG-GGcGGCGGcu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 48042 | 0.67 | 0.426311 |
Target: 5'- uCGAUCGCCugCUCGAcUCUCGUcguuCGUCGAa -3' miRNA: 3'- cGCUAGCGG--GAGCU-AGGGCG----GCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 21214 | 0.67 | 0.435398 |
Target: 5'- -aGAUCGUCaggCGGuacuUCCCGUCGUCGGu -3' miRNA: 3'- cgCUAGCGGga-GCU----AGGGCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 53663 | 0.66 | 0.492137 |
Target: 5'- gGCGuUCGCCC-CGAUCUCGaucaGCUGc -3' miRNA: 3'- -CGCuAGCGGGaGCUAGGGCgg--CGGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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