miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16251 3' -61 NC_004084.1 + 58132 0.69 0.304624
Target:  5'- gGCGGUCGUCgUCGAg-CCGCCGUg-- -3'
miRNA:   3'- -CGCUAGCGGgAGCUagGGCGGCGgcu -5'
16251 3' -61 NC_004084.1 + 57533 0.67 0.426311
Target:  5'- -gGAUCGUCCUCcAUCuCCuCCGCCa- -3'
miRNA:   3'- cgCUAGCGGGAGcUAG-GGcGGCGGcu -5'
16251 3' -61 NC_004084.1 + 57390 0.68 0.366006
Target:  5'- uCGAgcgCGCCCcCGAUCgcgucgaCGUCGCCGGc -3'
miRNA:   3'- cGCUa--GCGGGaGCUAGg------GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 57189 1.1 0.000297
Target:  5'- cGCGAUCGCCCUCGAUCCCGCCGCCGAg -3'
miRNA:   3'- -CGCUAGCGGGAGCUAGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 57122 0.68 0.357884
Target:  5'- uCGAggaCGUCCUCGGUgUCGCCGUCu- -3'
miRNA:   3'- cGCUa--GCGGGAGCUAgGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 56010 0.74 0.140121
Target:  5'- cGCGuacuUUGCCCUCGA-CUCGUCGUCGGa -3'
miRNA:   3'- -CGCu---AGCGGGAGCUaGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 55219 0.67 0.435398
Target:  5'- gGUGAgcuUCGCcaccgCCUCGuucacGUCCuCGCCGUCGAc -3'
miRNA:   3'- -CGCU---AGCG-----GGAGC-----UAGG-GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 54844 0.68 0.357884
Target:  5'- cGCGGUCGCCCgcucgcuuuccaUCGGaccgaCCUGCCaguucgagugucGCCGAa -3'
miRNA:   3'- -CGCUAGCGGG------------AGCUa----GGGCGG------------CGGCU- -5'
16251 3' -61 NC_004084.1 + 54800 0.71 0.24538
Target:  5'- cCGAUCGCCUcguagUCGGUCCagGCCGUCu- -3'
miRNA:   3'- cGCUAGCGGG-----AGCUAGGg-CGGCGGcu -5'
16251 3' -61 NC_004084.1 + 54791 0.71 0.216792
Target:  5'- cUGAUCGCCCUCcauaGUCCCGaugaCGCCc- -3'
miRNA:   3'- cGCUAGCGGGAGc---UAGGGCg---GCGGcu -5'
16251 3' -61 NC_004084.1 + 53663 0.66 0.492137
Target:  5'- gGCGuUCGCCC-CGAUCUCGaucaGCUGc -3'
miRNA:   3'- -CGCuAGCGGGaGCUAGGGCgg--CGGCu -5'
16251 3' -61 NC_004084.1 + 53207 0.7 0.263992
Target:  5'- cGUGAUCGU-CUCGAgcgugcugCCUGCCGCCu- -3'
miRNA:   3'- -CGCUAGCGgGAGCUa-------GGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 53065 0.68 0.357884
Target:  5'- -aGAUCGUCC-CaGUCCuCGCCGCCc- -3'
miRNA:   3'- cgCUAGCGGGaGcUAGG-GCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 52963 0.66 0.482434
Target:  5'- cGUGAUCGUCg-CGAgugcgCUgGUCGCCGAu -3'
miRNA:   3'- -CGCUAGCGGgaGCUa----GGgCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 51625 0.74 0.140121
Target:  5'- uCGAUUGCCUUCGAgaacgUCC-CCGCCGAg -3'
miRNA:   3'- cGCUAGCGGGAGCUa----GGGcGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 50954 0.71 0.22787
Target:  5'- cGCcGUCGCCgCUCGAg-UCGCCGUCGGa -3'
miRNA:   3'- -CGcUAGCGG-GAGCUagGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 50451 0.71 0.239422
Target:  5'- ---cUCGCCCUCG-UCCUGCgGUCGGc -3'
miRNA:   3'- cgcuAGCGGGAGCuAGGGCGgCGGCU- -5'
16251 3' -61 NC_004084.1 + 50133 0.67 0.435398
Target:  5'- cGCGAUCGUCCggaugaCGAggUCGuuGUCGAg -3'
miRNA:   3'- -CGCUAGCGGGa-----GCUagGGCggCGGCU- -5'
16251 3' -61 NC_004084.1 + 50071 0.71 0.233586
Target:  5'- gGCGAUUGCUCUCGAaaaCGCCgGCUGGa -3'
miRNA:   3'- -CGCUAGCGGGAGCUaggGCGG-CGGCU- -5'
16251 3' -61 NC_004084.1 + 49606 0.76 0.099185
Target:  5'- gGCGAguUCGCCgUCGAcggagaUCUCGUCGCCGGg -3'
miRNA:   3'- -CGCU--AGCGGgAGCU------AGGGCGGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.