Results 1 - 20 of 100 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16251 | 3' | -61 | NC_004084.1 | + | 53663 | 0.66 | 0.492137 |
Target: 5'- gGCGuUCGCCC-CGAUCUCGaucaGCUGc -3' miRNA: 3'- -CGCuAGCGGGaGCUAGGGCgg--CGGCu -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 35006 | 0.67 | 0.435398 |
Target: 5'- aGCGAUCaGCUgggCUCGAgUUUCGUCGUCGAu -3' miRNA: 3'- -CGCUAG-CGG---GAGCU-AGGGCGGCGGCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 48042 | 0.67 | 0.426311 |
Target: 5'- uCGAUCGCCugCUCGAcUCUCGUcguuCGUCGAa -3' miRNA: 3'- cGCUAGCGG--GAGCU-AGGGCG----GCGGCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 57189 | 1.1 | 0.000297 |
Target: 5'- cGCGAUCGCCCUCGAUCCCGCCGCCGAg -3' miRNA: 3'- -CGCUAGCGGGAGCUAGGGCGGCGGCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 41019 | 0.66 | 0.482434 |
Target: 5'- -aGAUC-UCCUCGAUCacuCUGCCGgCGAg -3' miRNA: 3'- cgCUAGcGGGAGCUAG---GGCGGCgGCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 14608 | 0.66 | 0.472825 |
Target: 5'- aUGAUCcaucuCCCggCGcUCCuCGCCGCCGGa -3' miRNA: 3'- cGCUAGc----GGGa-GCuAGG-GCGGCGGCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 45274 | 0.66 | 0.463313 |
Target: 5'- uCGGUCGUCCga-AUCgUCGCCGUCGAa -3' miRNA: 3'- cGCUAGCGGGagcUAG-GGCGGCGGCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 2761 | 0.66 | 0.463313 |
Target: 5'- gGCGAUgGCCUUCGucUCCUGCgUGCaGAc -3' miRNA: 3'- -CGCUAgCGGGAGCu-AGGGCG-GCGgCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 36813 | 0.66 | 0.453902 |
Target: 5'- -aGAUCGuCCCgagaCGGUCCagcuGCuCGCCGGu -3' miRNA: 3'- cgCUAGC-GGGa---GCUAGGg---CG-GCGGCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 50133 | 0.67 | 0.435398 |
Target: 5'- cGCGAUCGUCCggaugaCGAggUCGuuGUCGAg -3' miRNA: 3'- -CGCUAGCGGGa-----GCUagGGCggCGGCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 2445 | 0.66 | 0.444596 |
Target: 5'- gGCGAUCaGCCC-C--UCCgCGUCGCCGu -3' miRNA: 3'- -CGCUAG-CGGGaGcuAGG-GCGGCGGCu -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 14173 | 0.66 | 0.453902 |
Target: 5'- cCGGUCGuCCCgucguagaCGAgcUCCCaGCCGUCGGc -3' miRNA: 3'- cGCUAGC-GGGa-------GCU--AGGG-CGGCGGCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 52963 | 0.66 | 0.482434 |
Target: 5'- cGUGAUCGUCg-CGAgugcgCUgGUCGCCGAu -3' miRNA: 3'- -CGCUAGCGGgaGCUa----GGgCGGCGGCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 29505 | 0.66 | 0.444596 |
Target: 5'- cCGAcgUCGCUCUCGGgcacaCCCGCuuCGCCa- -3' miRNA: 3'- cGCU--AGCGGGAGCUa----GGGCG--GCGGcu -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 40247 | 0.66 | 0.482434 |
Target: 5'- cGCGAgugaCGUgCUCGAUCUccaucguccacuCGCCGgCGAc -3' miRNA: 3'- -CGCUa---GCGgGAGCUAGG------------GCGGCgGCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 49505 | 0.66 | 0.463313 |
Target: 5'- -gGAUCGUCUUCGGcUUCCGCCucuucguCCGAg -3' miRNA: 3'- cgCUAGCGGGAGCU-AGGGCGGc------GGCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 55219 | 0.67 | 0.435398 |
Target: 5'- gGUGAgcuUCGCcaccgCCUCGuucacGUCCuCGCCGUCGAc -3' miRNA: 3'- -CGCU---AGCG-----GGAGC-----UAGG-GCGGCGGCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 21214 | 0.67 | 0.435398 |
Target: 5'- -aGAUCGUCaggCGGuacuUCCCGUCGUCGGu -3' miRNA: 3'- cgCUAGCGGga-GCU----AGGGCGGCGGCU- -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 14453 | 0.66 | 0.482434 |
Target: 5'- aGCG-UCGuuCCCUCGcccUCCCagGCCGCCu- -3' miRNA: 3'- -CGCuAGC--GGGAGCu--AGGG--CGGCGGcu -5' |
|||||||
16251 | 3' | -61 | NC_004084.1 | + | 31538 | 0.66 | 0.472825 |
Target: 5'- cGCGAUCG-CCUCGGaggacaUCgCGCUaCCGAc -3' miRNA: 3'- -CGCUAGCgGGAGCU------AGgGCGGcGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home