miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16251 3' -61 NC_004084.1 + 53663 0.66 0.492137
Target:  5'- gGCGuUCGCCC-CGAUCUCGaucaGCUGc -3'
miRNA:   3'- -CGCuAGCGGGaGCUAGGGCgg--CGGCu -5'
16251 3' -61 NC_004084.1 + 35006 0.67 0.435398
Target:  5'- aGCGAUCaGCUgggCUCGAgUUUCGUCGUCGAu -3'
miRNA:   3'- -CGCUAG-CGG---GAGCU-AGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 48042 0.67 0.426311
Target:  5'- uCGAUCGCCugCUCGAcUCUCGUcguuCGUCGAa -3'
miRNA:   3'- cGCUAGCGG--GAGCU-AGGGCG----GCGGCU- -5'
16251 3' -61 NC_004084.1 + 57189 1.1 0.000297
Target:  5'- cGCGAUCGCCCUCGAUCCCGCCGCCGAg -3'
miRNA:   3'- -CGCUAGCGGGAGCUAGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 41019 0.66 0.482434
Target:  5'- -aGAUC-UCCUCGAUCacuCUGCCGgCGAg -3'
miRNA:   3'- cgCUAGcGGGAGCUAG---GGCGGCgGCU- -5'
16251 3' -61 NC_004084.1 + 14608 0.66 0.472825
Target:  5'- aUGAUCcaucuCCCggCGcUCCuCGCCGCCGGa -3'
miRNA:   3'- cGCUAGc----GGGa-GCuAGG-GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 45274 0.66 0.463313
Target:  5'- uCGGUCGUCCga-AUCgUCGCCGUCGAa -3'
miRNA:   3'- cGCUAGCGGGagcUAG-GGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 2761 0.66 0.463313
Target:  5'- gGCGAUgGCCUUCGucUCCUGCgUGCaGAc -3'
miRNA:   3'- -CGCUAgCGGGAGCu-AGGGCG-GCGgCU- -5'
16251 3' -61 NC_004084.1 + 36813 0.66 0.453902
Target:  5'- -aGAUCGuCCCgagaCGGUCCagcuGCuCGCCGGu -3'
miRNA:   3'- cgCUAGC-GGGa---GCUAGGg---CG-GCGGCU- -5'
16251 3' -61 NC_004084.1 + 50133 0.67 0.435398
Target:  5'- cGCGAUCGUCCggaugaCGAggUCGuuGUCGAg -3'
miRNA:   3'- -CGCUAGCGGGa-----GCUagGGCggCGGCU- -5'
16251 3' -61 NC_004084.1 + 2445 0.66 0.444596
Target:  5'- gGCGAUCaGCCC-C--UCCgCGUCGCCGu -3'
miRNA:   3'- -CGCUAG-CGGGaGcuAGG-GCGGCGGCu -5'
16251 3' -61 NC_004084.1 + 14173 0.66 0.453902
Target:  5'- cCGGUCGuCCCgucguagaCGAgcUCCCaGCCGUCGGc -3'
miRNA:   3'- cGCUAGC-GGGa-------GCU--AGGG-CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 52963 0.66 0.482434
Target:  5'- cGUGAUCGUCg-CGAgugcgCUgGUCGCCGAu -3'
miRNA:   3'- -CGCUAGCGGgaGCUa----GGgCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 29505 0.66 0.444596
Target:  5'- cCGAcgUCGCUCUCGGgcacaCCCGCuuCGCCa- -3'
miRNA:   3'- cGCU--AGCGGGAGCUa----GGGCG--GCGGcu -5'
16251 3' -61 NC_004084.1 + 40247 0.66 0.482434
Target:  5'- cGCGAgugaCGUgCUCGAUCUccaucguccacuCGCCGgCGAc -3'
miRNA:   3'- -CGCUa---GCGgGAGCUAGG------------GCGGCgGCU- -5'
16251 3' -61 NC_004084.1 + 49505 0.66 0.463313
Target:  5'- -gGAUCGUCUUCGGcUUCCGCCucuucguCCGAg -3'
miRNA:   3'- cgCUAGCGGGAGCU-AGGGCGGc------GGCU- -5'
16251 3' -61 NC_004084.1 + 55219 0.67 0.435398
Target:  5'- gGUGAgcuUCGCcaccgCCUCGuucacGUCCuCGCCGUCGAc -3'
miRNA:   3'- -CGCU---AGCG-----GGAGC-----UAGG-GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 21214 0.67 0.435398
Target:  5'- -aGAUCGUCaggCGGuacuUCCCGUCGUCGGu -3'
miRNA:   3'- cgCUAGCGGga-GCU----AGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 14453 0.66 0.482434
Target:  5'- aGCG-UCGuuCCCUCGcccUCCCagGCCGCCu- -3'
miRNA:   3'- -CGCuAGC--GGGAGCu--AGGG--CGGCGGcu -5'
16251 3' -61 NC_004084.1 + 31538 0.66 0.472825
Target:  5'- cGCGAUCG-CCUCGGaggacaUCgCGCUaCCGAc -3'
miRNA:   3'- -CGCUAGCgGGAGCU------AGgGCGGcGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.