miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16251 3' -61 NC_004084.1 + 2445 0.66 0.444596
Target:  5'- gGCGAUCaGCCC-C--UCCgCGUCGCCGu -3'
miRNA:   3'- -CGCUAG-CGGGaGcuAGG-GCGGCGGCu -5'
16251 3' -61 NC_004084.1 + 49505 0.66 0.463313
Target:  5'- -gGAUCGUCUUCGGcUUCCGCCucuucguCCGAg -3'
miRNA:   3'- cgCUAGCGGGAGCU-AGGGCGGc------GGCU- -5'
16251 3' -61 NC_004084.1 + 14173 0.66 0.453902
Target:  5'- cCGGUCGuCCCgucguagaCGAgcUCCCaGCCGUCGGc -3'
miRNA:   3'- cGCUAGC-GGGa-------GCU--AGGG-CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 2761 0.66 0.463313
Target:  5'- gGCGAUgGCCUUCGucUCCUGCgUGCaGAc -3'
miRNA:   3'- -CGCUAgCGGGAGCu-AGGGCG-GCGgCU- -5'
16251 3' -61 NC_004084.1 + 477 0.67 0.417338
Target:  5'- cCGGuUCGUcgCCUCGAUCCUGCUGgCGc -3'
miRNA:   3'- cGCU-AGCG--GGAGCUAGGGCGGCgGCu -5'
16251 3' -61 NC_004084.1 + 55219 0.67 0.435398
Target:  5'- gGUGAgcuUCGCcaccgCCUCGuucacGUCCuCGCCGUCGAc -3'
miRNA:   3'- -CGCU---AGCG-----GGAGC-----UAGG-GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 50133 0.67 0.435398
Target:  5'- cGCGAUCGUCCggaugaCGAggUCGuuGUCGAg -3'
miRNA:   3'- -CGCUAGCGGGa-----GCUagGGCggCGGCU- -5'
16251 3' -61 NC_004084.1 + 35006 0.67 0.435398
Target:  5'- aGCGAUCaGCUgggCUCGAgUUUCGUCGUCGAu -3'
miRNA:   3'- -CGCUAG-CGG---GAGCU-AGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 21214 0.67 0.435398
Target:  5'- -aGAUCGUCaggCGGuacuUCCCGUCGUCGGu -3'
miRNA:   3'- cgCUAGCGGga-GCU----AGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 48042 0.67 0.426311
Target:  5'- uCGAUCGCCugCUCGAcUCUCGUcguuCGUCGAa -3'
miRNA:   3'- cGCUAGCGG--GAGCU-AGGGCG----GCGGCU- -5'
16251 3' -61 NC_004084.1 + 512 0.67 0.391123
Target:  5'- aGCGGUCGgaCUUCGAUgagcgguucgCCCGCCGguUCGAg -3'
miRNA:   3'- -CGCUAGCg-GGAGCUA----------GGGCGGC--GGCU- -5'
16251 3' -61 NC_004084.1 + 5092 0.67 0.391123
Target:  5'- aGCGGUCuGCCCaggCGGg-CCGCCagcugGCCGAc -3'
miRNA:   3'- -CGCUAG-CGGGa--GCUagGGCGG-----CGGCU- -5'
16251 3' -61 NC_004084.1 + 44029 0.67 0.399741
Target:  5'- --cAUCGCCC-CGAUCUCGCCGagUGGg -3'
miRNA:   3'- cgcUAGCGGGaGCUAGGGCGGCg-GCU- -5'
16251 3' -61 NC_004084.1 + 12211 0.67 0.417338
Target:  5'- aUGAUCGUcgacgcauCCgacgaCGAUCUCGCCGCCu- -3'
miRNA:   3'- cGCUAGCG--------GGa----GCUAGGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 1785 0.67 0.435398
Target:  5'- gGUGGUCGUUCUgagccaCGAUCCgGCgaacuCGCCGAc -3'
miRNA:   3'- -CGCUAGCGGGA------GCUAGGgCG-----GCGGCU- -5'
16251 3' -61 NC_004084.1 + 3137 0.67 0.435398
Target:  5'- uCGAUacgcaGCUgaCGAUCUacaCGCCGCCGAc -3'
miRNA:   3'- cGCUAg----CGGgaGCUAGG---GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 47322 0.67 0.435398
Target:  5'- cGCGAaCGg---CGAUCUCGUCGCCGAc -3'
miRNA:   3'- -CGCUaGCgggaGCUAGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 57533 0.67 0.426311
Target:  5'- -gGAUCGUCCUCcAUCuCCuCCGCCa- -3'
miRNA:   3'- cgCUAGCGGGAGcUAG-GGcGGCGGcu -5'
16251 3' -61 NC_004084.1 + 22809 0.67 0.417338
Target:  5'- uCGAgagggCGUCacggaUCGAUCCguucgaGCCGCCGAg -3'
miRNA:   3'- cGCUa----GCGGg----AGCUAGGg-----CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 9056 0.67 0.423607
Target:  5'- cUGGUUGCCCUUcuggaacguucggaGAUCgCCGCgguaCGCCGAc -3'
miRNA:   3'- cGCUAGCGGGAG--------------CUAG-GGCG----GCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.