miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16251 3' -61 NC_004084.1 + 49271 0.71 0.233586
Target:  5'- aGCGAUUacCCCUCGAcUUCCGCCcgacggacGCCGAu -3'
miRNA:   3'- -CGCUAGc-GGGAGCU-AGGGCGG--------CGGCU- -5'
16251 3' -61 NC_004084.1 + 50071 0.71 0.233586
Target:  5'- gGCGAUUGCUCUCGAaaaCGCCgGCUGGa -3'
miRNA:   3'- -CGCUAGCGGGAGCUaggGCGG-CGGCU- -5'
16251 3' -61 NC_004084.1 + 28694 0.71 0.239422
Target:  5'- cCGGUCGCCCggaCGAUCUCcucgaacgGCCGCgCGGg -3'
miRNA:   3'- cGCUAGCGGGa--GCUAGGG--------CGGCG-GCU- -5'
16251 3' -61 NC_004084.1 + 50451 0.71 0.239422
Target:  5'- ---cUCGCCCUCG-UCCUGCgGUCGGc -3'
miRNA:   3'- cgcuAGCGGGAGCuAGGGCGgCGGCU- -5'
16251 3' -61 NC_004084.1 + 54800 0.71 0.24538
Target:  5'- cCGAUCGCCUcguagUCGGUCCagGCCGUCu- -3'
miRNA:   3'- cGCUAGCGGG-----AGCUAGGg-CGGCGGcu -5'
16251 3' -61 NC_004084.1 + 23204 0.71 0.24538
Target:  5'- cGCGAUCGUCggCUCGAUCCCGaCGauuCGGa -3'
miRNA:   3'- -CGCUAGCGG--GAGCUAGGGCgGCg--GCU- -5'
16251 3' -61 NC_004084.1 + 41108 0.71 0.24538
Target:  5'- uCGAUCGUaaUCUCGAUgugCUCGCCGCCa- -3'
miRNA:   3'- cGCUAGCG--GGAGCUA---GGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 11846 0.7 0.25146
Target:  5'- aCGAUCGCCg-CGAUgCCGauGCCGAg -3'
miRNA:   3'- cGCUAGCGGgaGCUAgGGCggCGGCU- -5'
16251 3' -61 NC_004084.1 + 21539 0.7 0.256413
Target:  5'- gGCGAUCGCaucuuccgucggCUUGAgUCCaCGCUGCCGGa -3'
miRNA:   3'- -CGCUAGCGg-----------GAGCU-AGG-GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 16934 0.7 0.257663
Target:  5'- cGCGAUCGUCUUCcguucucgCCCGCacuCGCCGGc -3'
miRNA:   3'- -CGCUAGCGGGAGcua-----GGGCG---GCGGCU- -5'
16251 3' -61 NC_004084.1 + 53207 0.7 0.263992
Target:  5'- cGUGAUCGU-CUCGAgcgugcugCCUGCCGCCu- -3'
miRNA:   3'- -CGCUAGCGgGAGCUa-------GGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 9139 0.7 0.270446
Target:  5'- -gGAaCGCCUUCGAcuUCgCCGUCGCCGu -3'
miRNA:   3'- cgCUaGCGGGAGCU--AG-GGCGGCGGCu -5'
16251 3' -61 NC_004084.1 + 40447 0.7 0.283733
Target:  5'- -aGcgCGCCgaCGAUUCCGCCGUCa- -3'
miRNA:   3'- cgCuaGCGGgaGCUAGGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 19153 0.7 0.290568
Target:  5'- cGCGAUCGacgaccaCCaUCu-UCCCGCCGCCc- -3'
miRNA:   3'- -CGCUAGCg------GG-AGcuAGGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 44520 0.7 0.293338
Target:  5'- aGCGGUCGCCCagcugcaggggaaGGUCCUcgGCUGCUGGu -3'
miRNA:   3'- -CGCUAGCGGGag-----------CUAGGG--CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 27979 0.69 0.297532
Target:  5'- aGCGGgacgUCGUCCUCGccaucgcUUCCGUCGCCGc -3'
miRNA:   3'- -CGCU----AGCGGGAGCu------AGGGCGGCGGCu -5'
16251 3' -61 NC_004084.1 + 58132 0.69 0.304624
Target:  5'- gGCGGUCGUCgUCGAg-CCGCCGUg-- -3'
miRNA:   3'- -CGCUAGCGGgAGCUagGGCGGCGgcu -5'
16251 3' -61 NC_004084.1 + 47365 0.69 0.319196
Target:  5'- gGCGGcCGCCCcuUCG-UCCgCGUCGUCGAc -3'
miRNA:   3'- -CGCUaGCGGG--AGCuAGG-GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 16652 0.69 0.326676
Target:  5'- uCGAcgUCGUCCgggaGGUCCuCGUCGCCGGc -3'
miRNA:   3'- cGCU--AGCGGGag--CUAGG-GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 14650 0.69 0.334285
Target:  5'- gGCGAgCGCCCagUCGAUgCCCGCgagcgucccgGCCGGg -3'
miRNA:   3'- -CGCUaGCGGG--AGCUA-GGGCGg---------CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.