miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16252 3' -53 NC_004084.1 + 35470 0.66 0.860343
Target:  5'- cCAGGAGCaGGUcGAggCGGCgAUCgcCGAg -3'
miRNA:   3'- -GUCUUCG-CCA-CUa-GCCGgUAGaaGCU- -5'
16252 3' -53 NC_004084.1 + 20562 0.66 0.851893
Target:  5'- gAGGAGaCGGgccaguucgaAUCGGCCGUCgaCGAa -3'
miRNA:   3'- gUCUUC-GCCac--------UAGCCGGUAGaaGCU- -5'
16252 3' -53 NC_004084.1 + 20904 0.67 0.776592
Target:  5'- -cGGAGCGGUGAcCGGUuccuggaugcuCGUCUguUCGGg -3'
miRNA:   3'- guCUUCGCCACUaGCCG-----------GUAGA--AGCU- -5'
16252 3' -53 NC_004084.1 + 27459 0.68 0.756012
Target:  5'- -cGGAGCGGgagacGGUCGG-CGUCcUCGAg -3'
miRNA:   3'- guCUUCGCCa----CUAGCCgGUAGaAGCU- -5'
16252 3' -53 NC_004084.1 + 56788 0.68 0.745521
Target:  5'- gCAGAAGCc--GGUCGGCC-UCcUCGAg -3'
miRNA:   3'- -GUCUUCGccaCUAGCCGGuAGaAGCU- -5'
16252 3' -53 NC_004084.1 + 18832 0.68 0.724199
Target:  5'- aGGAGGaCGGUGGcgCGGCUuUCgUCGAc -3'
miRNA:   3'- gUCUUC-GCCACUa-GCCGGuAGaAGCU- -5'
16252 3' -53 NC_004084.1 + 17286 0.69 0.69154
Target:  5'- uGGAGGCGGUGG-CGGCgGUggCggCGAg -3'
miRNA:   3'- gUCUUCGCCACUaGCCGgUA--GaaGCU- -5'
16252 3' -53 NC_004084.1 + 33218 0.69 0.658353
Target:  5'- aCAGAGGCGGccGAgcgGGCCGUCcccuacgagUUCGAu -3'
miRNA:   3'- -GUCUUCGCCa-CUag-CCGGUAG---------AAGCU- -5'
16252 3' -53 NC_004084.1 + 25083 0.69 0.658353
Target:  5'- -cGAcAGUGGUGGUaCGGUCGUCaUUCGGc -3'
miRNA:   3'- guCU-UCGCCACUA-GCCGGUAG-AAGCU- -5'
16252 3' -53 NC_004084.1 + 7346 0.71 0.547633
Target:  5'- cCAG-AGUGG-GGUCaGGCCAUCUaCGAg -3'
miRNA:   3'- -GUCuUCGCCaCUAG-CCGGUAGAaGCU- -5'
16252 3' -53 NC_004084.1 + 35873 0.76 0.326437
Target:  5'- cCGGAc-CGcGUGAUCGGUCGUCUUCGGc -3'
miRNA:   3'- -GUCUucGC-CACUAGCCGGUAGAAGCU- -5'
16252 3' -53 NC_004084.1 + 56795 1.09 0.001908
Target:  5'- cCAGAAGCGGUGAUCGGCCAUCUUCGAc -3'
miRNA:   3'- -GUCUUCGCCACUAGCCGGUAGAAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.