miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16252 5' -62.6 NC_004084.1 + 16013 0.66 0.358617
Target:  5'- gGCCAccuccGCCcgugacuGCGCGGGCCuccUCGAGg-- -3'
miRNA:   3'- aCGGU-----UGGu------CGCGCCCGG---AGCUCgga -5'
16252 5' -62.6 NC_004084.1 + 12916 0.66 0.3578
Target:  5'- gGCCGACCGGC-CcGGCCagguagacgcugaUCGAcGCCg -3'
miRNA:   3'- aCGGUUGGUCGcGcCCGG-------------AGCU-CGGa -5'
16252 5' -62.6 NC_004084.1 + 56897 0.66 0.350502
Target:  5'- aGaCCGACCgcgAGUGCaucGGCUUCGAGCUc -3'
miRNA:   3'- aC-GGUUGG---UCGCGc--CCGGAGCUCGGa -5'
16252 5' -62.6 NC_004084.1 + 29931 0.66 0.350502
Target:  5'- cGCCAGCCcGUGuuGGCUcCGuGCCa -3'
miRNA:   3'- aCGGUUGGuCGCgcCCGGaGCuCGGa -5'
16252 5' -62.6 NC_004084.1 + 30586 0.66 0.345696
Target:  5'- gGCgAACCggagcggggugagguGGCGCGGGaucuuCUCGAcGCCg -3'
miRNA:   3'- aCGgUUGG---------------UCGCGCCCg----GAGCU-CGGa -5'
16252 5' -62.6 NC_004084.1 + 8163 0.66 0.342519
Target:  5'- gUGCCGACCAGCccgcuccaGCGacGCCUCaGAGUg- -3'
miRNA:   3'- -ACGGUUGGUCG--------CGCc-CGGAG-CUCGga -5'
16252 5' -62.6 NC_004084.1 + 56659 0.66 0.327714
Target:  5'- cGCCAGgccccgcucgguacuUCGGCgGCGGGUCUCGgucaccgaucgagcAGCCg -3'
miRNA:   3'- aCGGUU---------------GGUCG-CGCCCGGAGC--------------UCGGa -5'
16252 5' -62.6 NC_004084.1 + 44553 0.67 0.304587
Target:  5'- cUGCUgguGCCAGCGCcucaacgaugacGGGCCUgGcuGCCa -3'
miRNA:   3'- -ACGGu--UGGUCGCG------------CCCGGAgCu-CGGa -5'
16252 5' -62.6 NC_004084.1 + 40744 0.67 0.304587
Target:  5'- aGCuCGACCAGCGUcgcccugugcucGGGUgUCGcccaGGCCUc -3'
miRNA:   3'- aCG-GUUGGUCGCG------------CCCGgAGC----UCGGA- -5'
16252 5' -62.6 NC_004084.1 + 29450 0.67 0.297399
Target:  5'- cGCgAACgCGGCGUGGGCg-CGAuGCCc -3'
miRNA:   3'- aCGgUUG-GUCGCGCCCGgaGCU-CGGa -5'
16252 5' -62.6 NC_004084.1 + 8290 0.67 0.290344
Target:  5'- cGUCAuCCGGacgauCGCGGGCCUCGAcUCg -3'
miRNA:   3'- aCGGUuGGUC-----GCGCCCGGAGCUcGGa -5'
16252 5' -62.6 NC_004084.1 + 45491 0.68 0.269965
Target:  5'- cGUCGAUCAGCGUcuaccuggccGGGCCggUCG-GCCa -3'
miRNA:   3'- aCGGUUGGUCGCG----------CCCGG--AGCuCGGa -5'
16252 5' -62.6 NC_004084.1 + 10756 0.68 0.250755
Target:  5'- gGCUcGCCAGUGgGGGCgucgccgacCUCGAcGCCg -3'
miRNA:   3'- aCGGuUGGUCGCgCCCG---------GAGCU-CGGa -5'
16252 5' -62.6 NC_004084.1 + 2225 0.69 0.232686
Target:  5'- cGCCGcucgcuucgGCCAGCGCGGagaucuCCUCGGucuuGCCg -3'
miRNA:   3'- aCGGU---------UGGUCGCGCCc-----GGAGCU----CGGa -5'
16252 5' -62.6 NC_004084.1 + 39456 0.7 0.194769
Target:  5'- gGCCGACUGGCGCGaGcGCCgaUCGAggagGCCa -3'
miRNA:   3'- aCGGUUGGUCGCGC-C-CGG--AGCU----CGGa -5'
16252 5' -62.6 NC_004084.1 + 51187 0.7 0.19377
Target:  5'- cGCCGaucgucgaggucggcGCUGGCGCGGGCUacugggcguggugcgUCGAGCa- -3'
miRNA:   3'- aCGGU---------------UGGUCGCGCCCGG---------------AGCUCGga -5'
16252 5' -62.6 NC_004084.1 + 22583 0.7 0.171096
Target:  5'- gGCCGAUCGGCGUcuggggGGGCCUuCGuGCUc -3'
miRNA:   3'- aCGGUUGGUCGCG------CCCGGA-GCuCGGa -5'
16252 5' -62.6 NC_004084.1 + 31990 0.71 0.162369
Target:  5'- aGCC-GCCAGaGCGGGCCUggaGGGCUc -3'
miRNA:   3'- aCGGuUGGUCgCGCCCGGAg--CUCGGa -5'
16252 5' -62.6 NC_004084.1 + 57215 0.74 0.094948
Target:  5'- aGCCAGCCAGCGUucaGGa-UCGAGCCg -3'
miRNA:   3'- aCGGUUGGUCGCGc--CCggAGCUCGGa -5'
16252 5' -62.6 NC_004084.1 + 56830 1.06 0.000302
Target:  5'- cUGCCAACCAGCGCGGGCCUCGAGCCUc -3'
miRNA:   3'- -ACGGUUGGUCGCGCCCGGAGCUCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.