miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16253 5' -55.2 NC_004084.1 + 56731 1.07 0.001766
Target:  5'- cUCGGACGUCCUUCGCGUCGAUCAGGUc -3'
miRNA:   3'- -AGCCUGCAGGAAGCGCAGCUAGUCCA- -5'
16253 5' -55.2 NC_004084.1 + 49211 0.73 0.371995
Target:  5'- cCGaACG-CCUUCGCGUCGAaCGGGa -3'
miRNA:   3'- aGCcUGCaGGAAGCGCAGCUaGUCCa -5'
16253 5' -55.2 NC_004084.1 + 26252 0.7 0.515185
Target:  5'- -aGGGCGUCCUcgGCGUUGAUCAu-- -3'
miRNA:   3'- agCCUGCAGGAagCGCAGCUAGUcca -5'
16253 5' -55.2 NC_004084.1 + 35898 0.7 0.531848
Target:  5'- gUCGGACGUCCcgcuggaguggcCGCGUCGAgu-GGa -3'
miRNA:   3'- -AGCCUGCAGGaa----------GCGCAGCUaguCCa -5'
16253 5' -55.2 NC_004084.1 + 22910 0.7 0.546586
Target:  5'- -aGGAUGUCCcacUCGCGaccgUUGGUCGGGa -3'
miRNA:   3'- agCCUGCAGGa--AGCGC----AGCUAGUCCa -5'
16253 5' -55.2 NC_004084.1 + 19079 0.69 0.61094
Target:  5'- gCGGcCGUCUacgUCGaCGUCGAUCAGc- -3'
miRNA:   3'- aGCCuGCAGGa--AGC-GCAGCUAGUCca -5'
16253 5' -55.2 NC_004084.1 + 29099 0.68 0.632623
Target:  5'- -gGGACGUCCUcCGCGcCaucCAGGUa -3'
miRNA:   3'- agCCUGCAGGAaGCGCaGcuaGUCCA- -5'
16253 5' -55.2 NC_004084.1 + 34452 0.68 0.654304
Target:  5'- uUCGGACGUaCUUacCGCGUCcAUCGcGGUg -3'
miRNA:   3'- -AGCCUGCAgGAA--GCGCAGcUAGU-CCA- -5'
16253 5' -55.2 NC_004084.1 + 17916 0.67 0.675906
Target:  5'- gCGGGCugGUCCcaccUGCagGUCGAUCAGGUc -3'
miRNA:   3'- aGCCUG--CAGGaa--GCG--CAGCUAGUCCA- -5'
16253 5' -55.2 NC_004084.1 + 18101 0.67 0.686651
Target:  5'- cUCGGACGUCaggUCGa---GGUCGGGg -3'
miRNA:   3'- -AGCCUGCAGga-AGCgcagCUAGUCCa -5'
16253 5' -55.2 NC_004084.1 + 48026 0.67 0.686651
Target:  5'- gCGGA-GUUCUUCGCGcUCGAUCGc-- -3'
miRNA:   3'- aGCCUgCAGGAAGCGC-AGCUAGUcca -5'
16253 5' -55.2 NC_004084.1 + 7727 0.67 0.697346
Target:  5'- -aGGACGUCCUUCGCcUCGcu--GGc -3'
miRNA:   3'- agCCUGCAGGAAGCGcAGCuaguCCa -5'
16253 5' -55.2 NC_004084.1 + 26652 0.67 0.729018
Target:  5'- cUCGGACGUaCUUacCGCGUCcAUCGcGGUc -3'
miRNA:   3'- -AGCCUGCAgGAA--GCGCAGcUAGU-CCA- -5'
16253 5' -55.2 NC_004084.1 + 29701 0.66 0.738368
Target:  5'- gCGGACGcugUCCUggcugagUCGCGUCG-UCuGGc -3'
miRNA:   3'- aGCCUGC---AGGA-------AGCGCAGCuAGuCCa -5'
16253 5' -55.2 NC_004084.1 + 9244 0.66 0.739402
Target:  5'- -aGGGCGUCCa--GCGUC--UCGGGg -3'
miRNA:   3'- agCCUGCAGGaagCGCAGcuAGUCCa -5'
16253 5' -55.2 NC_004084.1 + 15679 0.66 0.739402
Target:  5'- cCGGGCcgauGUCCUUCGCcugcucgCGAUC-GGUg -3'
miRNA:   3'- aGCCUG----CAGGAAGCGca-----GCUAGuCCA- -5'
16253 5' -55.2 NC_004084.1 + 53582 0.66 0.739402
Target:  5'- cCGGAUGUgC-UCGCGaCGAUCGGcGa -3'
miRNA:   3'- aGCCUGCAgGaAGCGCaGCUAGUC-Ca -5'
16253 5' -55.2 NC_004084.1 + 27473 0.66 0.749681
Target:  5'- gUCGG-CGUCCUcgagcUCGaCGUCGAcgAGGc -3'
miRNA:   3'- -AGCCuGCAGGA-----AGC-GCAGCUagUCCa -5'
16253 5' -55.2 NC_004084.1 + 9791 0.66 0.76988
Target:  5'- gUGGcuCGUCCUggccguaguucUCGCagucGUUGAUCAGGUu -3'
miRNA:   3'- aGCCu-GCAGGA-----------AGCG----CAGCUAGUCCA- -5'
16253 5' -55.2 NC_004084.1 + 40482 0.66 0.779778
Target:  5'- uUCGGACGUCCcg-GUGUCaucuucuUCAGGc -3'
miRNA:   3'- -AGCCUGCAGGaagCGCAGcu-----AGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.