miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16254 3' -61.8 NC_004084.1 + 10968 0.66 0.412637
Target:  5'- uACGAccucgacccuUCUGgaCUGGAGGAGaUGcGGCUGACg -3'
miRNA:   3'- -UGCU----------AGGC--GGCCUCCUC-AC-CCGGCUG- -5'
16254 3' -61.8 NC_004084.1 + 37536 0.66 0.411747
Target:  5'- cCGA-CUGCCGGGgcugacugaccguGGAGUGGaCCGAUc -3'
miRNA:   3'- uGCUaGGCGGCCU-------------CCUCACCcGGCUG- -5'
16254 3' -61.8 NC_004084.1 + 18779 0.66 0.407316
Target:  5'- uGCGGUCgaGCCGGuuggagggaacauccAGGGcGUGuGGUCGGCg -3'
miRNA:   3'- -UGCUAGg-CGGCC---------------UCCU-CAC-CCGGCUG- -5'
16254 3' -61.8 NC_004084.1 + 11532 0.66 0.395072
Target:  5'- uGCag-CCGCCGG-GGcGUGGcggcaGCCGACg -3'
miRNA:   3'- -UGcuaGGCGGCCuCCuCACC-----CGGCUG- -5'
16254 3' -61.8 NC_004084.1 + 2249 0.66 0.395072
Target:  5'- gGCGGagaagggccUCCgaaaGCUGGAGGAGaugGGGCUGGu -3'
miRNA:   3'- -UGCU---------AGG----CGGCCUCCUCa--CCCGGCUg -5'
16254 3' -61.8 NC_004084.1 + 56973 0.66 0.377998
Target:  5'- aGCGGUCCGagCGaAGGAG-GcGGCCGAg -3'
miRNA:   3'- -UGCUAGGCg-GCcUCCUCaC-CCGGCUg -5'
16254 3' -61.8 NC_004084.1 + 30113 0.66 0.377998
Target:  5'- gACG--UCGCUGG-GGAGcGGGCCGGg -3'
miRNA:   3'- -UGCuaGGCGGCCuCCUCaCCCGGCUg -5'
16254 3' -61.8 NC_004084.1 + 6438 0.67 0.337534
Target:  5'- gUGGUgCGCCcGAGGAG-GGuGCUGGCg -3'
miRNA:   3'- uGCUAgGCGGcCUCCUCaCC-CGGCUG- -5'
16254 3' -61.8 NC_004084.1 + 5695 0.68 0.325269
Target:  5'- -aGGUCCGCUGGGuuGAGUucgaggacgucgcucGGGCCGAg -3'
miRNA:   3'- ugCUAGGCGGCCUc-CUCA---------------CCCGGCUg -5'
16254 3' -61.8 NC_004084.1 + 3643 0.68 0.300316
Target:  5'- gGCGAUCaguagCGCUGGcGGGGGuUGGGCUuGGCg -3'
miRNA:   3'- -UGCUAG-----GCGGCC-UCCUC-ACCCGG-CUG- -5'
16254 3' -61.8 NC_004084.1 + 17325 0.68 0.300316
Target:  5'- uACGAUCgaggagaucaaCGCCGGAGGcGaGGGCuCGAg -3'
miRNA:   3'- -UGCUAG-----------GCGGCCUCCuCaCCCG-GCUg -5'
16254 3' -61.8 NC_004084.1 + 41803 0.69 0.245073
Target:  5'- cACGAUcgaccucgaggagcCCGCCGGguccguaGGGGGUGacgaGGCCGAUg -3'
miRNA:   3'- -UGCUA--------------GGCGGCC-------UCCUCAC----CCGGCUG- -5'
16254 3' -61.8 NC_004084.1 + 9689 0.72 0.164961
Target:  5'- gUGGcCCGCCGGAGaccgcgguGAGUuGGCCGACg -3'
miRNA:   3'- uGCUaGGCGGCCUC--------CUCAcCCGGCUG- -5'
16254 3' -61.8 NC_004084.1 + 19000 0.72 0.160723
Target:  5'- -aGGUcCCGCUGGcGGGGUGGGaucCCGGCg -3'
miRNA:   3'- ugCUA-GGCGGCCuCCUCACCC---GGCUG- -5'
16254 3' -61.8 NC_004084.1 + 55905 1.08 0.000314
Target:  5'- gACGAUCCGCCGGAGGAGUGGGCCGACu -3'
miRNA:   3'- -UGCUAGGCGGCCUCCUCACCCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.