miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16254 5' -53.5 NC_004084.1 + 37073 0.66 0.847516
Target:  5'- gUGUCGagGUCCUCCUCGUcaguaccgaccucgaGGUCUg- -3'
miRNA:   3'- aGCAGUagUAGGAGGAGCG---------------CUAGGuc -5'
16254 5' -53.5 NC_004084.1 + 16392 0.66 0.844055
Target:  5'- aUGUCGaCcgCCUCgCUCGCGAcggCCAc -3'
miRNA:   3'- aGCAGUaGuaGGAG-GAGCGCUa--GGUc -5'
16254 5' -53.5 NC_004084.1 + 29119 0.66 0.835247
Target:  5'- aUCGUCuuaggCcUCCUCCUCgGCGGUgUCGGc -3'
miRNA:   3'- -AGCAGua---GuAGGAGGAG-CGCUA-GGUC- -5'
16254 5' -53.5 NC_004084.1 + 13934 0.66 0.835247
Target:  5'- cUCGUCAUCGUuuaggcgagCCUCaaaCUCGC--UCCGGa -3'
miRNA:   3'- -AGCAGUAGUA---------GGAG---GAGCGcuAGGUC- -5'
16254 5' -53.5 NC_004084.1 + 47377 0.66 0.826223
Target:  5'- uUCGUCcgCGUCgUCgaCGgCGAgcUCCAGg -3'
miRNA:   3'- -AGCAGuaGUAGgAGgaGC-GCU--AGGUC- -5'
16254 5' -53.5 NC_004084.1 + 16092 0.66 0.807571
Target:  5'- cUCGUCGaucUCGUCCcgacggUCgUCGCGAUCg-- -3'
miRNA:   3'- -AGCAGU---AGUAGG------AGgAGCGCUAGguc -5'
16254 5' -53.5 NC_004084.1 + 13494 0.67 0.768131
Target:  5'- aCGUCAUCGUcaCCUCagcuaggCGCGGgucgucgCCAGg -3'
miRNA:   3'- aGCAGUAGUA--GGAGga-----GCGCUa------GGUC- -5'
16254 5' -53.5 NC_004084.1 + 23157 0.67 0.757891
Target:  5'- cUCGUcCAUCGUCCaUCCUgGUcGUcCCAGa -3'
miRNA:   3'- -AGCA-GUAGUAGG-AGGAgCGcUA-GGUC- -5'
16254 5' -53.5 NC_004084.1 + 4355 0.67 0.757891
Target:  5'- cUCGccCGUC-UCCUCgUCGCGcGUCCAa -3'
miRNA:   3'- -AGCa-GUAGuAGGAGgAGCGC-UAGGUc -5'
16254 5' -53.5 NC_004084.1 + 39514 0.68 0.704979
Target:  5'- aCGUCAUCguucgcgacGUCCucgaggaucUCCUCGUGAUggCCAGc -3'
miRNA:   3'- aGCAGUAG---------UAGG---------AGGAGCGCUA--GGUC- -5'
16254 5' -53.5 NC_004084.1 + 29095 0.68 0.704979
Target:  5'- gCGUgGgaCGUCCUCCgCGCcAUCCAGg -3'
miRNA:   3'- aGCAgUa-GUAGGAGGaGCGcUAGGUC- -5'
16254 5' -53.5 NC_004084.1 + 30767 0.68 0.704979
Target:  5'- -aGUCGagCGaCCUCCUcgaggcguaCGCGAUCCAGc -3'
miRNA:   3'- agCAGUa-GUaGGAGGA---------GCGCUAGGUC- -5'
16254 5' -53.5 NC_004084.1 + 17164 0.69 0.67228
Target:  5'- cCGUCAUCAUCCcgauUCCgUCGgGGUUCu- -3'
miRNA:   3'- aGCAGUAGUAGG----AGG-AGCgCUAGGuc -5'
16254 5' -53.5 NC_004084.1 + 13137 0.69 0.643652
Target:  5'- cCGUCGUCGUacucgaCCUCCUucggguacacacagaUGCGGUcCCAGg -3'
miRNA:   3'- aGCAGUAGUA------GGAGGA---------------GCGCUA-GGUC- -5'
16254 5' -53.5 NC_004084.1 + 11399 0.69 0.639237
Target:  5'- aUCGUCAUCgaucgcgacGUCCUCgaggaaCUCGCGGUCg-- -3'
miRNA:   3'- -AGCAGUAG---------UAGGAG------GAGCGCUAGguc -5'
16254 5' -53.5 NC_004084.1 + 45879 0.71 0.551524
Target:  5'- aCGUCGUCGUCgCUCaccugcaagcuCUCG-GAUCCAGc -3'
miRNA:   3'- aGCAGUAGUAG-GAG-----------GAGCgCUAGGUC- -5'
16254 5' -53.5 NC_004084.1 + 16533 0.71 0.551524
Target:  5'- gUCGUCGUgGaCCUCCUCGCaGUUCGc -3'
miRNA:   3'- -AGCAGUAgUaGGAGGAGCGcUAGGUc -5'
16254 5' -53.5 NC_004084.1 + 38837 0.72 0.502663
Target:  5'- cUCGUCGUCcucguggucugggacGUCgUCCUCGuCGAgCCAGa -3'
miRNA:   3'- -AGCAGUAG---------------UAGgAGGAGC-GCUaGGUC- -5'
16254 5' -53.5 NC_004084.1 + 56102 0.73 0.418898
Target:  5'- cUCGUCAUCGUCCUCgUCGaCG-UCguGc -3'
miRNA:   3'- -AGCAGUAGUAGGAGgAGC-GCuAGguC- -5'
16254 5' -53.5 NC_004084.1 + 39415 0.74 0.409496
Target:  5'- gCGUCGUCGUCCUCaCUCGaugcuucguUGAUCgAGa -3'
miRNA:   3'- aGCAGUAGUAGGAG-GAGC---------GCUAGgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.