miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16255 3' -51.2 NC_004084.1 + 6335 0.66 0.936363
Target:  5'- aGAUCGUCGCgaGCGUUCUccauCCGcuGCu -3'
miRNA:   3'- cUUAGCAGCG--CGCAAGGaaauGGC--CG- -5'
16255 3' -51.2 NC_004084.1 + 48676 0.66 0.930887
Target:  5'- cGAagGUCGCGaCGUgggagaUCCUcgaagccGCCGGCa -3'
miRNA:   3'- cUUagCAGCGC-GCA------AGGAaa-----UGGCCG- -5'
16255 3' -51.2 NC_004084.1 + 57639 0.66 0.930887
Target:  5'- ----gGUCGCGCGUcgCCUcgacgagccgAUCGGCc -3'
miRNA:   3'- cuuagCAGCGCGCAa-GGAaa--------UGGCCG- -5'
16255 3' -51.2 NC_004084.1 + 4367 0.67 0.892053
Target:  5'- --cUCGUCGCGCG-UCCa--ACCGuaGCc -3'
miRNA:   3'- cuuAGCAGCGCGCaAGGaaaUGGC--CG- -5'
16255 3' -51.2 NC_004084.1 + 2348 0.67 0.889847
Target:  5'- aGAGUCGUCGUuccGCGUcgUCCUcgaagucguagaacUUgACCGGg -3'
miRNA:   3'- -CUUAGCAGCG---CGCA--AGGA--------------AA-UGGCCg -5'
16255 3' -51.2 NC_004084.1 + 19988 0.67 0.883846
Target:  5'- ---aCGUCGCGCGUUCgcucgaguucgcgCUUuaUGCCgaGGCc -3'
miRNA:   3'- cuuaGCAGCGCGCAAG-------------GAA--AUGG--CCG- -5'
16255 3' -51.2 NC_004084.1 + 481 0.67 0.868913
Target:  5'- --uUCGUCGCcuCGaUCCU--GCUGGCg -3'
miRNA:   3'- cuuAGCAGCGc-GCaAGGAaaUGGCCG- -5'
16255 3' -51.2 NC_004084.1 + 8326 0.68 0.852205
Target:  5'- ---gCGUCgGCGCGgaugaUCCa--GCCGGCg -3'
miRNA:   3'- cuuaGCAG-CGCGCa----AGGaaaUGGCCG- -5'
16255 3' -51.2 NC_004084.1 + 37941 0.68 0.839937
Target:  5'- gGGAUCGUCGCGUuugaagacgaCUUcGCCGGUc -3'
miRNA:   3'- -CUUAGCAGCGCGcaag------GAAaUGGCCG- -5'
16255 3' -51.2 NC_004084.1 + 49486 0.68 0.832727
Target:  5'- gGAGUCGUCG-GCGUcaUCCggaucgucuUCGGCu -3'
miRNA:   3'- -CUUAGCAGCgCGCA--AGGaaau-----GGCCG- -5'
16255 3' -51.2 NC_004084.1 + 16647 0.69 0.806424
Target:  5'- -cGUCGUCGaCGuCGUccgggaggUCCUcgucGCCGGCg -3'
miRNA:   3'- cuUAGCAGC-GC-GCA--------AGGAaa--UGGCCG- -5'
16255 3' -51.2 NC_004084.1 + 48329 0.69 0.786716
Target:  5'- uGAUCGUCGCGCcc-CCUUcguccUCGGCg -3'
miRNA:   3'- cUUAGCAGCGCGcaaGGAAau---GGCCG- -5'
16255 3' -51.2 NC_004084.1 + 51351 0.7 0.766343
Target:  5'- --uUCGUCGacggguacaCGCuGUUCCUcUGCUGGCc -3'
miRNA:   3'- cuuAGCAGC---------GCG-CAAGGAaAUGGCCG- -5'
16255 3' -51.2 NC_004084.1 + 3919 0.72 0.624276
Target:  5'- uAGUCGUCGaagGCG-UCCUcgaACCGGCu -3'
miRNA:   3'- cUUAGCAGCg--CGCaAGGAaa-UGGCCG- -5'
16255 3' -51.2 NC_004084.1 + 46590 0.74 0.524977
Target:  5'- cGAUCGUCGUgcugaagcucGCGaUCCUcUACCGGUu -3'
miRNA:   3'- cUUAGCAGCG----------CGCaAGGAaAUGGCCG- -5'
16255 3' -51.2 NC_004084.1 + 3087 0.74 0.493103
Target:  5'- -cGUCGaCGUGCGUUCCg--GCgGGCu -3'
miRNA:   3'- cuUAGCaGCGCGCAAGGaaaUGgCCG- -5'
16255 3' -51.2 NC_004084.1 + 38507 0.77 0.363602
Target:  5'- cGAUCGUCGCGagcaucguucgaaGUUCCUguucuacACCGGCg -3'
miRNA:   3'- cUUAGCAGCGCg------------CAAGGAaa-----UGGCCG- -5'
16255 3' -51.2 NC_004084.1 + 29972 0.82 0.182221
Target:  5'- --cUCGUCGCGCGUgUCCUUguagaACCGGUu -3'
miRNA:   3'- cuuAGCAGCGCGCA-AGGAAa----UGGCCG- -5'
16255 3' -51.2 NC_004084.1 + 55736 1.12 0.00197
Target:  5'- gGAAUCGUCGCGCGUUCCUUUACCGGCu -3'
miRNA:   3'- -CUUAGCAGCGCGCAAGGAAAUGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.