Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16255 | 5' | -50.5 | NC_004084.1 | + | 1980 | 0.68 | 0.885247 |
Target: 5'- gGACaacgGGAugcagacuacgucguCGA-GGACGCGAUCGAGUu -3' miRNA: 3'- gCUGa---CCU---------------GCUaCUUGUGCUAGCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 57979 | 0.68 | 0.866317 |
Target: 5'- gGACUGaACGAUgGGAUACGAcuaCGAGUg -3' miRNA: 3'- gCUGACcUGCUA-CUUGUGCUa--GCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 4460 | 0.69 | 0.844173 |
Target: 5'- cCGACUGGACGAUcgaguucgagcuggcGAagcccgACACGAaacugcaggaugUCGAGa -3' miRNA: 3'- -GCUGACCUGCUA---------------CU------UGUGCU------------AGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 51136 | 0.7 | 0.812886 |
Target: 5'- aCGcUUGGGCGAUcccgaacgaGGAgGCGAUCGAGa -3' miRNA: 3'- -GCuGACCUGCUA---------CUUgUGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 41440 | 0.7 | 0.812886 |
Target: 5'- -aGCUGGGCc---GACGCGAUCGAGg -3' miRNA: 3'- gcUGACCUGcuacUUGUGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 1053 | 0.7 | 0.78338 |
Target: 5'- cCGAggcauCUGGGCGAUGAACAaccaGAUCcAGg -3' miRNA: 3'- -GCU-----GACCUGCUACUUGUg---CUAGcUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 28279 | 0.71 | 0.762875 |
Target: 5'- uCGACucgUGGACGG-GAGucuCGCGAUCGGGg -3' miRNA: 3'- -GCUG---ACCUGCUaCUU---GUGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 12601 | 0.71 | 0.752408 |
Target: 5'- aGGCaccgUGGAuCGGccaGAGCGCGAUCGGGUa -3' miRNA: 3'- gCUG----ACCU-GCUa--CUUGUGCUAGCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 40938 | 0.71 | 0.731105 |
Target: 5'- gGGCUGGACGGacguCGCGAaCGAGUu -3' miRNA: 3'- gCUGACCUGCUacuuGUGCUaGCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 14155 | 0.72 | 0.698409 |
Target: 5'- uGGCUGGA---UGAACACGGuaUCGAGg -3' miRNA: 3'- gCUGACCUgcuACUUGUGCU--AGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 7855 | 0.72 | 0.687362 |
Target: 5'- aCGAguuCUGGACGG---ACAUGAUCGAGg -3' miRNA: 3'- -GCU---GACCUGCUacuUGUGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 18159 | 0.72 | 0.676259 |
Target: 5'- gCGAgUGGACGAUGGA---GAUCGAGc -3' miRNA: 3'- -GCUgACCUGCUACUUgugCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 39458 | 0.73 | 0.653935 |
Target: 5'- cCGACUGG-CGc-GAGCGcCGAUCGAGg -3' miRNA: 3'- -GCUGACCuGCuaCUUGU-GCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 55773 | 1.07 | 0.004959 |
Target: 5'- uCGACUGGACGAUGAACACGAUCGAGUc -3' miRNA: 3'- -GCUGACCUGCUACUUGUGCUAGCUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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